Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HAPS_RS04120 Genome accession   NC_011852
Coordinates   843620..843961 (-) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis SH0165     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 838620..848961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS04100 (HAPS_0840) prfB 839565..840663 (+) 1099 WP_096334835.1 peptide chain release factor 2 -
  HAPS_RS04105 (HAPS_0841) cmoB 840753..841715 (-) 963 WP_041603135.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  HAPS_RS04110 (HAPS_0842) - 841838..842935 (-) 1098 WP_012621948.1 ISAs1 family transposase -
  HAPS_RS11515 (HAPS_0843) - 843072..843520 (+) 449 Protein_836 IS5 family transposase -
  HAPS_RS04120 (HAPS_0844) comEA/comE1 843620..843961 (-) 342 WP_010786294.1 ComEA family DNA-binding protein Machinery gene
  HAPS_RS04125 (HAPS_0845) - 844219..845484 (+) 1266 WP_012621949.1 LysM-like peptidoglycan-binding domain-containing protein -
  HAPS_RS04130 (HAPS_0846) - 845676..845942 (+) 267 WP_234799243.1 MliC family protein -
  HAPS_RS04135 (HAPS_0847) waaF 845951..847003 (+) 1053 WP_012621950.1 lipopolysaccharide heptosyltransferase II -
  HAPS_RS04140 (HAPS_0848) - 847099..847686 (+) 588 WP_005714008.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=32570 HAPS_RS04120 WP_010786294.1 843620..843961(-) (comEA/comE1) [Glaesserella parasuis SH0165]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=32570 HAPS_RS04120 WP_010786294.1 843620..843961(-) (comEA/comE1) [Glaesserella parasuis SH0165]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602

Multiple sequence alignment