Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   EGX64_RS12675 Genome accession   NZ_CP033782
Coordinates   2530610..2531656 (-) Length   348 a.a.
NCBI ID   WP_002447441.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_529     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2525610..2536656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX64_RS12645 (EGX64_12640) - 2525994..2527235 (-) 1242 WP_099774840.1 aminopeptidase -
  EGX64_RS12650 (EGX64_12645) - 2527237..2527452 (-) 216 WP_001830421.1 DUF1128 domain-containing protein -
  EGX64_RS12655 (EGX64_12650) - 2527594..2528058 (+) 465 WP_002458546.1 low molecular weight protein-tyrosine-phosphatase -
  EGX64_RS12660 (EGX64_12655) - 2528066..2528350 (+) 285 WP_002447438.1 YtxH domain-containing protein -
  EGX64_RS12665 (EGX64_12660) - 2528756..2529934 (+) 1179 WP_002458547.1 YihY/virulence factor BrkB family protein -
  EGX64_RS12670 (EGX64_12665) vraR 2529991..2530620 (-) 630 WP_002473914.1 two-component system response regulator VraR Regulator
  EGX64_RS12675 (EGX64_12670) vraS 2530610..2531656 (-) 1047 WP_002447441.1 sensor histidine kinase Regulator
  EGX64_RS12680 (EGX64_12675) liaF 2531653..2532354 (-) 702 WP_002447442.1 cell wall-active antibiotics response protein LiaF -
  EGX64_RS12685 (EGX64_12680) - 2532369..2532755 (-) 387 WP_162153127.1 hypothetical protein -
  EGX64_RS12690 (EGX64_12685) map 2532913..2533668 (-) 756 WP_002447444.1 type I methionyl aminopeptidase -
  EGX64_RS12695 (EGX64_12690) - 2533842..2534828 (+) 987 WP_002447445.1 aromatic acid exporter family protein -
  EGX64_RS12700 (EGX64_12695) - 2534981..2535517 (-) 537 WP_099774844.1 hypothetical protein -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40114.53 Da        Isoelectric Point: 5.8512

>NTDB_id=325695 EGX64_RS12675 WP_002447441.1 2530610..2531656(-) (vraS) [Staphylococcus epidermidis strain FDAARGOS_529]
MNHYIRAIGSMLILVYSMLIAFLFIDKVFVNIIFFQGMFYTQIFGIPVFLFLNLLIVFLCIIVGSVLAYKINQQNDWIIS
QIERSIEGQTVGINDQNIELYTETIDIYHTLVPLNQELHRLRMKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLNQQIPILEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVLHEI
QDFEVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNQEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEENSSGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=325695 EGX64_RS12675 WP_002447441.1 2530610..2531656(-) (vraS) [Staphylococcus epidermidis strain FDAARGOS_529]
ATGAATCACTACATAAGAGCTATAGGCTCAATGCTTATATTAGTATATAGTATGCTTATTGCTTTTTTATTTATTGATAA
AGTGTTTGTAAATATTATCTTTTTTCAAGGGATGTTTTATACACAAATATTTGGAATACCTGTTTTTCTATTTTTAAATT
TATTAATTGTTTTTTTATGTATTATAGTTGGATCTGTTTTAGCTTATAAAATTAATCAACAAAATGATTGGATTATTTCC
CAAATAGAAAGATCAATAGAAGGACAAACAGTAGGTATCAATGATCAAAATATCGAATTATATACAGAAACTATAGATAT
TTATCATACACTAGTTCCATTAAATCAAGAATTACATCGACTTAGAATGAAGACTCAGAATTTAACTAATGAAAACTACA
ATATTAATGATGTAAAAGTCAAAAAGATTATCGAAGATGAGCGACAACGACTTGCAAGGGAATTGCATGATTCTGTTAGC
CAACAATTATTTGCTGCGAGCATGATGCTATCGGCAATAAAAGAGTCGAAATTAGAACCACCTTTAAATCAACAGATACC
AATTCTTGAAAAAATGGTTCAAGACTCACAACTTGAAATGAGAGCTTTGTTGTTACATTTAAGACCGATAGGTTTAAAAG
ATAAGTCTCTAGGTGAAGGTATTAAAGATTTAGTCATCGATTTACAAAAGAAAGTACCAATGAAAGTTTTGCATGAAATT
CAAGATTTTGAAGTGCCAAAAGGTATTGAAGATCATTTGTTCAGAATTACACAAGAAGCTATTTCAAATACATTGAGACA
TTCAAATGGTACGAAAGTAACTGTGGAATTATTTAATCAAGAGGATTATCTTTTACTAAGAATTCAAGATAATGGAAAAG
GATTTAATGTAGATGAAAAATTTGAACAAAGTTATGGTTTAAAAAATATGCGAGAACGAGCGTTAGAAATTGGTGCGACG
TTTCATATTGTATCTTTACCTGATTCAGGTACACGAATTGAAGTTAAGGCACCATTGAATAAGGAGGAGAATTCAAGTGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

92.442

98.851

0.914


Multiple sequence alignment