Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   EGX64_RS08525 Genome accession   NZ_CP033782
Coordinates   1663198..1663773 (+) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_529     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658198..1668773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX64_RS08495 (EGX64_08490) - 1659095..1660600 (+) 1506 WP_002458038.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  EGX64_RS08500 (EGX64_08495) - 1660703..1661305 (-) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  EGX64_RS08505 (EGX64_08500) - 1661311..1661496 (-) 186 WP_001829339.1 DUF2187 family protein -
  EGX64_RS08510 (EGX64_08505) - 1661701..1662687 (+) 987 WP_002446122.1 lipoate--protein ligase -
  EGX64_RS08515 (EGX64_08510) - 1662765..1662983 (-) 219 WP_001829292.1 IDEAL domain-containing protein -
  EGX64_RS08525 (EGX64_08520) comK/comK1 1663198..1663773 (+) 576 WP_001829272.1 competence protein ComK Regulator
  EGX64_RS13055 mobV 1664845..1665302 (+) 458 Protein_1581 MobV family relaxase -
  EGX64_RS08555 (EGX64_08550) - 1665384..1665500 (+) 117 WP_002458042.1 hypothetical protein -
  EGX64_RS08560 (EGX64_08555) - 1665521..1665756 (+) 236 Protein_1583 recombinase -
  EGX64_RS08565 (EGX64_08560) - 1665967..1666914 (+) 948 WP_002446126.1 fatty acid desaturase family protein -
  EGX64_RS08570 (EGX64_08565) - 1666918..1667535 (+) 618 WP_002458044.1 LysE family transporter -
  EGX64_RS08575 (EGX64_08570) - 1667605..1667763 (-) 159 WP_002446129.1 replication/maintenance protein RepL -
  EGX64_RS13155 - 1668196..1668312 (-) 117 WP_350481929.1 SAR1012 family small protein -
  EGX64_RS08585 (EGX64_08580) - 1668415..1668630 (-) 216 WP_001831694.1 NINE protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=325678 EGX64_RS08525 WP_001829272.1 1663198..1663773(+) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_529]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=325678 EGX64_RS08525 WP_001829272.1 1663198..1663773(+) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_529]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment