Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IHMA87_RS12845 Genome accession   NZ_CP041354
Coordinates   2655347..2655991 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650347..2660991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS12825 (IHMA87_02516) - 2651331..2652140 (+) 810 WP_034082484.1 helix-turn-helix transcriptional regulator -
  IHMA87_RS12830 (IHMA87_02517) - 2652171..2653199 (-) 1029 WP_034082481.1 AraC family transcriptional regulator -
  IHMA87_RS12835 (IHMA87_02518) - 2653831..2654979 (+) 1149 WP_034082478.1 FAD-dependent monooxygenase -
  IHMA87_RS12845 (IHMA87_02519) letA 2655347..2655991 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IHMA87_RS12850 (IHMA87_02520) uvrC 2655992..2657818 (+) 1827 WP_033996661.1 excinuclease ABC subunit UvrC -
  IHMA87_RS12855 (IHMA87_02521) pgsA 2657852..2658412 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IHMA87_RS12870 (IHMA87_02523) - 2659064..2660464 (-) 1401 WP_185964964.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=325604 IHMA87_RS12845 WP_003090351.1 2655347..2655991(+) (letA) [Pseudomonas aeruginosa strain AZPAE15042]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=325604 IHMA87_RS12845 WP_003090351.1 2655347..2655991(+) (letA) [Pseudomonas aeruginosa strain AZPAE15042]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAGGACTGTCTGAAACTGGCGCGCGAGCTGAAGCCGGACGTGGTCCTGATGG
ACGTCAAGATGCCCGGCATCGGCGGTCTGGAAGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTG
GTCACCGTCTGCGAGGAGGATCCGTTCCCCACTCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAGATGGTCCAGGCGATCCGCCAGGTGTTCGCCGGCCAGCGCTACATCAGCCCGCAGATCGCCCAGCAGCTGG
CGCTGAAATCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACGGTGAATACCTACCGCTACCG
TATCTTCGAGAAGCTCTCGATCACCAGCGATGTGGAACTGGCGTTGCTCGCCGTCCGTCATGGCATGGTCGACGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537