Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EGX83_RS13865 Genome accession   NZ_CP033768
Coordinates   2899071..2899712 (-) Length   213 a.a.
NCBI ID   WP_086351977.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894071..2904712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS13845 (EGX83_13840) aroK 2894987..2895556 (-) 570 WP_000643712.1 shikimate kinase AroK -
  EGX83_RS13850 (EGX83_13845) pilQ 2895568..2897733 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  EGX83_RS13855 (EGX83_13850) pilP 2897796..2898323 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  EGX83_RS13860 (EGX83_13855) pilO 2898334..2899074 (-) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGX83_RS13865 (EGX83_13860) pilN 2899071..2899712 (-) 642 WP_086351977.1 PilN domain-containing protein Machinery gene
  EGX83_RS13870 (EGX83_13865) pilM 2899712..2900770 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  EGX83_RS13875 (EGX83_13870) ponA 2900932..2903487 (+) 2556 WP_032058623.1 penicillin-binding protein PBP1a -
  EGX83_RS13880 (EGX83_13875) - 2903505..2904329 (-) 825 WP_086351976.1 putative RNA methyltransferase -
  EGX83_RS13885 (EGX83_13880) - 2904332..2904664 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24070.46 Da        Isoelectric Point: 5.4244

>NTDB_id=325564 EGX83_RS13865 WP_086351977.1 2899071..2899712(-) (pilN) [Acinetobacter baumannii strain FDAARGOS_533]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRMEDRYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=325564 EGX83_RS13865 WP_086351977.1 2899071..2899712(-) (pilN) [Acinetobacter baumannii strain FDAARGOS_533]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGATGGAAGACCGCTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGAGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment