Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IHMA87_RS01855 Genome accession   NZ_CP041354
Coordinates   386486..387823 (+) Length   445 a.a.
NCBI ID   WP_053813239.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381486..392823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS01835 (IHMA87_00347) - 382323..382889 (-) 567 WP_034079243.1 hypothetical protein -
  IHMA87_RS01840 (IHMA87_00348) rsmD 382886..383488 (-) 603 WP_034079241.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IHMA87_RS01845 (IHMA87_00349) - 383488..384975 (-) 1488 WP_012073980.1 M16 family metallopeptidase -
  IHMA87_RS01850 (IHMA87_00350) - 384968..386365 (-) 1398 WP_079383446.1 M16 family metallopeptidase -
  IHMA87_RS01855 (IHMA87_00351) pilA 386486..387823 (+) 1338 WP_053813239.1 signal recognition particle-docking protein FtsY Machinery gene
  IHMA87_RS01860 (IHMA87_00352) ftsE 387820..388491 (+) 672 WP_033997950.1 cell division ATP-binding protein FtsE -
  IHMA87_RS01865 (IHMA87_00353) ftsX 388491..389498 (+) 1008 WP_034082339.1 permease-like cell division protein FtsX -
  IHMA87_RS01870 (IHMA87_00354) rpoH 389609..390463 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  IHMA87_RS01875 (IHMA87_00355) - 390528..391133 (+) 606 WP_034082336.1 hypothetical protein -
  IHMA87_RS01880 (IHMA87_00356) mtgA 391138..391869 (-) 732 WP_012073987.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  IHMA87_RS01885 (IHMA87_00357) - 391906..392283 (+) 378 WP_034082334.1 DUF423 domain-containing protein -
  IHMA87_RS01890 (IHMA87_00358) thiS 392386..392586 (+) 201 WP_003156175.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 47191.74 Da        Isoelectric Point: 4.6664

>NTDB_id=325564 IHMA87_RS01855 WP_053813239.1 386486..387823(+) (pilA) [Pseudomonas aeruginosa strain AZPAE15042]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETSAAEQRTPADDAAPALTEQPVRQEPPAAVPAMPPAP
VAEAPLAHGEPATPVEAPVAQPEPILAAEPEPEPEPEPEPAAPVAAAPAASEPAARPGFFARLRQGLSKTSASIGEGMAS
LFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPY
VILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKAR
GIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQARQFNLAVELTGLALTKLDGTAKG
GVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=325564 IHMA87_RS01855 WP_053813239.1 386486..387823(+) (pilA) [Pseudomonas aeruginosa strain AZPAE15042]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGCCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTTTCCGAGACATCGGCCGCCGAGCAGCGCACGCCTGCCG
ACGACGCGGCGCCGGCCCTGACAGAACAGCCAGTGCGGCAGGAGCCGCCCGCTGCCGTGCCGGCCATGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCCATGGCGAGCCCGCGACGCCGGTCGAGGCGCCCGTCGCCCAGCCCGAGCCTATCCTGGC
CGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGCTGCGCCGGTGGCCGCCGCCCCGGCCGCCAGCGAGCCGG
CTGCCAGGCCGGGCTTCTTCGCCCGCCTCCGCCAGGGCCTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGC
CTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACCCGCCTGCTGACCGCCGACGTCGGCGT
CGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACA
AGGCATTGCAGGAAGAGCTGGCCAGCCTGCTGCGTCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTAT
GTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGG
CAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACC
GCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCGGCCAAGGCCCGC
GGCATCGACGTGCTGATCGCCGATACCGCCGGACGTCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCG
CCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCACGAGGTCCTCCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCA
TCAACCAGGCCAGGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGC
GGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCG
TACCTTCGAGGCCGATGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(240-439)

SRP54-type protein, helical bundle domain (SRP54_N)

(155-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.344

97.303

0.461

Multiple sequence alignment