Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGX83_RS13365 Genome accession   NZ_CP033768
Coordinates   2793259..2793894 (+) Length   211 a.a.
NCBI ID   WP_032058662.1    Uniprot ID   A0A009PM98
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2788259..2798894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS13350 (EGX83_13350) adeT2 2789319..2790305 (-) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -
  EGX83_RS13355 (EGX83_13355) - 2790385..2791200 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  EGX83_RS13360 (EGX83_13360) recG 2791221..2793266 (+) 2046 WP_032058663.1 ATP-dependent DNA helicase RecG -
  EGX83_RS13365 (EGX83_13365) comF 2793259..2793894 (+) 636 WP_032058662.1 ComF family protein Machinery gene
  EGX83_RS13370 (EGX83_13370) - 2793897..2794298 (-) 402 WP_000849701.1 NUDIX hydrolase -
  EGX83_RS13375 (EGX83_13375) - 2794313..2794894 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  EGX83_RS13380 (EGX83_13380) - 2795052..2796065 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  EGX83_RS13385 (EGX83_13385) - 2796135..2796422 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  EGX83_RS13390 (EGX83_13390) - 2796434..2797075 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  EGX83_RS13395 (EGX83_13395) - 2797102..2797782 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EGX83_RS13400 (EGX83_13400) mlaE 2797782..2798558 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24593.75 Da        Isoelectric Point: 9.7140

>NTDB_id=325552 EGX83_RS13365 WP_032058662.1 2793259..2793894(+) (comF) [Acinetobacter baumannii strain FDAARGOS_533]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYVYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=325552 EGX83_RS13365 WP_032058662.1 2793259..2793894(+) (comF) [Acinetobacter baumannii strain FDAARGOS_533]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGTCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PM98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment