Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EGX83_RS05345 | Genome accession | NZ_CP033768 |
| Coordinates | 1110331..1110711 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain FDAARGOS_533 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1105331..1115711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX83_RS05315 (EGX83_05315) | kdsB | 1106234..1106995 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| EGX83_RS05320 (EGX83_05320) | - | 1107007..1107987 (+) | 981 | WP_032058875.1 | DNA polymerase III subunit delta' | - |
| EGX83_RS05325 (EGX83_05325) | - | 1107999..1108340 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| EGX83_RS05330 (EGX83_05330) | - | 1108358..1109131 (+) | 774 | WP_032058876.1 | TatD family hydrolase | - |
| EGX83_RS05335 (EGX83_05335) | - | 1109169..1109777 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EGX83_RS05340 (EGX83_05340) | - | 1109787..1110341 (+) | 555 | WP_004841361.1 | type II secretion system protein | - |
| EGX83_RS05345 (EGX83_05345) | xcpV | 1110331..1110711 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EGX83_RS05350 (EGX83_05350) | xcpW | 1110711..1111412 (+) | 702 | WP_000594585.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EGX83_RS05355 (EGX83_05355) | gspK | 1111412..1112371 (+) | 960 | WP_031997570.1 | type II secretion system minor pseudopilin GspK | - |
| EGX83_RS05360 (EGX83_05360) | - | 1112601..1113197 (+) | 597 | WP_032058878.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EGX83_RS05365 (EGX83_05365) | ung | 1113248..1113961 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EGX83_RS05370 (EGX83_05370) | - | 1113958..1115082 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EGX83_RS05375 (EGX83_05375) | tadA | 1115089..1115592 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=325543 EGX83_RS05345 WP_000836911.1 1110331..1110711(+) (xcpV) [Acinetobacter baumannii strain FDAARGOS_533]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=325543 EGX83_RS05345 WP_000836911.1 1110331..1110711(+) (xcpV) [Acinetobacter baumannii strain FDAARGOS_533]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |