Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FLK62_RS03690 Genome accession   NZ_CP041334
Coordinates   745476..746105 (-) Length   209 a.a.
NCBI ID   WP_012621497.1    Uniprot ID   B8F317
Organism   Glaesserella parasuis strain HPS412     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740476..751105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS03675 (FLK62_03710) ligA 741171..743198 (+) 2028 WP_176443528.1 NAD-dependent DNA ligase LigA -
  FLK62_RS03680 (FLK62_03715) recQ 743256..745085 (-) 1830 WP_176443529.1 ATP-dependent DNA helicase RecQ Machinery gene
  FLK62_RS03685 (FLK62_03720) cyaY 745085..745393 (-) 309 WP_075630377.1 iron donor protein CyaY -
  FLK62_RS03690 (FLK62_03725) dinR/lexA 745476..746105 (-) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  FLK62_RS03695 (FLK62_03730) - 746300..747160 (-) 861 WP_176443530.1 SEL1-like repeat protein -
  FLK62_RS03700 (FLK62_03735) - 747425..748207 (-) 783 WP_176443531.1 hypothetical protein -
  FLK62_RS03705 (FLK62_03740) - 748213..749295 (-) 1083 WP_176443532.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23212.60 Da        Isoelectric Point: 5.6315

>NTDB_id=325441 FLK62_RS03690 WP_012621497.1 745476..746105(-) (dinR/lexA) [Glaesserella parasuis strain HPS412]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIVVDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=325441 FLK62_RS03690 WP_012621497.1 745476..746105(-) (dinR/lexA) [Glaesserella parasuis strain HPS412]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGTATGCC
ACCAACTCGTGTAGAAATTGCTCGTGAAATTGGGTTTAAATCACCAAATGCCGCAGAAGAACACCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGGACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCAGCAAACGATGAA
GAAGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAAGCCATTGAACATATCGAAAAACATTATCCTGT
GAATGGGGCAATGTTCTCGCCAGCTGCCGATTATCTTCTTAAGGTGAATGGGAACTCAATGGAAAAAATTGGTATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACTAAATCTGTTCGTAATGGGCAAGTCGTTGTCGCCCGTGTTGATGATGAAGTC
ACCGTCAAACGCTTAGAGAAAAAAGGCGATTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTGTCGTCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCCGTAGGCGTTATTCGTAGTAATGCGTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F317

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.235

97.608

0.373