Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FLK62_RS03680 Genome accession   NZ_CP041334
Coordinates   743256..745085 (-) Length   609 a.a.
NCBI ID   WP_176443529.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 738256..750085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS03650 (FLK62_03685) frdC 738352..738747 (+) 396 WP_016528237.1 fumarate reductase subunit FrdC -
  FLK62_RS03655 (FLK62_03690) frdD 738761..739105 (+) 345 WP_021112084.1 fumarate reductase subunit FrdD -
  FLK62_RS03665 (FLK62_03700) cysZ 739424..740179 (-) 756 WP_038514394.1 sulfate transporter CysZ -
  FLK62_RS03670 (FLK62_03705) zipA 740289..741107 (+) 819 WP_016528235.1 cell division protein ZipA -
  FLK62_RS03675 (FLK62_03710) ligA 741171..743198 (+) 2028 WP_176443528.1 NAD-dependent DNA ligase LigA -
  FLK62_RS03680 (FLK62_03715) recQ 743256..745085 (-) 1830 WP_176443529.1 ATP-dependent DNA helicase RecQ Machinery gene
  FLK62_RS03685 (FLK62_03720) cyaY 745085..745393 (-) 309 WP_075630377.1 iron donor protein CyaY -
  FLK62_RS03690 (FLK62_03725) dinR/lexA 745476..746105 (-) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  FLK62_RS03695 (FLK62_03730) - 746300..747160 (-) 861 WP_176443530.1 SEL1-like repeat protein -
  FLK62_RS03700 (FLK62_03735) - 747425..748207 (-) 783 WP_176443531.1 hypothetical protein -
  FLK62_RS03705 (FLK62_03740) - 748213..749295 (-) 1083 WP_176443532.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69055.26 Da        Isoelectric Point: 7.6750

>NTDB_id=325440 FLK62_RS03680 WP_176443529.1 743256..745085(-) (recQ) [Glaesserella parasuis strain HPS412]
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVNQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATAYVQKQQTSKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=325440 FLK62_RS03680 WP_176443529.1 743256..745085(-) (recQ) [Glaesserella parasuis strain HPS412]
ATGTCAGTTATACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCAGGACAACTCAAACTACTTTACCTTTCACCCGAAAAGGTAATGACATCCAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCATACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGAATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGTATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCACCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GGTACAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGAATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGTTACACAAGGT
ATTATTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCTCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCAACAGCTTATGTGCAGAAACAGCAAACTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTG
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGACTTATTAGAGAGCATTTATATCATATAGAAAGTATTGTTTGTGATTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

HRDC domain (HRDC)

(530-596)

DEAD/DEAH box helicase (DEAD)

(25-181)

RQC domain (RQC)

(402-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.086

97.044

0.379