Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FLK62_RS00920 Genome accession   NZ_CP041334
Coordinates   190438..191688 (-) Length   416 a.a.
NCBI ID   WP_038514710.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 185438..196688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS00900 (FLK62_00895) pilB 185908..187293 (+) 1386 WP_176443368.1 GspE/PulE family protein Machinery gene
  FLK62_RS00905 (FLK62_00900) pilC 187286..188482 (+) 1197 WP_149350581.1 type II secretion system F family protein Machinery gene
  FLK62_RS00910 (FLK62_00905) - 188479..189147 (+) 669 WP_035491631.1 prepilin peptidase -
  FLK62_RS00915 (FLK62_00910) dapE 189231..190364 (+) 1134 WP_176443369.1 succinyl-diaminopimelate desuccinylase -
  FLK62_RS00920 (FLK62_00915) clpX 190438..191688 (-) 1251 WP_038514710.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FLK62_RS00925 (FLK62_00920) clpP 191695..192276 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  FLK62_RS00930 (FLK62_00925) - 192377..192766 (+) 390 WP_010787002.1 SufE family protein -
  FLK62_RS00935 (FLK62_00930) - 192844..193440 (-) 597 WP_176443370.1 SLC13 family permease -
  FLK62_RS00940 (FLK62_00935) - 193980..194600 (+) 621 WP_176443371.1 L-threonylcarbamoyladenylate synthase -
  FLK62_RS00945 (FLK62_00940) rluB 194768..195787 (+) 1020 WP_016528555.1 23S rRNA pseudouridine(2605) synthase RluB -
  FLK62_RS12660 - 196098..196361 (+) 264 Protein_177 IS3 family transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45761.50 Da        Isoelectric Point: 5.4104

>NTDB_id=325428 FLK62_RS00920 WP_038514710.1 190438..191688(-) (clpX) [Glaesserella parasuis strain HPS412]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKARQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=325428 FLK62_RS00920 WP_038514710.1 190438..191688(-) (clpX) [Glaesserella parasuis strain HPS412]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTTTCTGACAA
TAAAGAGAGTGAAGGCGTTGAGTTGGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGTGAAGGGGTTCAGC
AGGCATTACTTAAATTGATTGAAGGTACTATCGCGAATATCAATCCACAAGGCGGACGCAAACACCCGAAACAAGAAACC
ATCCCAGTTGATACCTCTAAAATTCTCTTTATCTGTGGCGGTGCATTTGCAGGGCTAGATAAAATTGTCGAAGCTCGAAC
GAATACACAAGGTGGAATTGGCTTTAAAGCAGAATTGAAAAAAGATAAAGCTCGTCAAGCACTCACTGAATTATTCAAAC
AAGTTGAACCTGAAGATTTGGTGAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCTTTGTTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCTAAGGTGGAGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.718

98.798

0.55
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.412

98.077

0.534