Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   FLK62_RS00890 Genome accession   NZ_CP041334
Coordinates   183832..185208 (-) Length   458 a.a.
NCBI ID   WP_005711784.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178832..190208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS00865 (FLK62_00860) - 178880..179554 (+) 675 WP_005714023.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  FLK62_RS00870 (FLK62_00865) - 179598..181052 (-) 1455 WP_176443365.1 aminoacyl-histidine dipeptidase -
  FLK62_RS00875 (FLK62_00870) gpt 181233..181712 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  FLK62_RS00880 (FLK62_00875) - 182113..183084 (+) 972 WP_176443366.1 transposase -
  FLK62_RS00885 (FLK62_00880) gmk 183153..183779 (+) 627 WP_021113158.1 guanylate kinase -
  FLK62_RS00890 (FLK62_00885) radA/sms 183832..185208 (-) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  FLK62_RS00895 (FLK62_00890) pilA 185396..185860 (+) 465 WP_176443367.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FLK62_RS00900 (FLK62_00895) pilB 185908..187293 (+) 1386 WP_176443368.1 GspE/PulE family protein Machinery gene
  FLK62_RS00905 (FLK62_00900) pilC 187286..188482 (+) 1197 WP_149350581.1 type II secretion system F family protein Machinery gene
  FLK62_RS00910 (FLK62_00905) - 188479..189147 (+) 669 WP_035491631.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49531.18 Da        Isoelectric Point: 7.6964

>NTDB_id=325424 FLK62_RS00890 WP_005711784.1 183832..185208(-) (radA/sms) [Glaesserella parasuis strain HPS412]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=325424 FLK62_RS00890 WP_005711784.1 183832..185208(-) (radA/sms) [Glaesserella parasuis strain HPS412]
ATGGCAAAAGCACCAAAAACTGCTTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAGTGTAAGGC
GTGTTTAGCGTGGAACACTATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGCAAAAGTGACCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGATTGTCTGAAATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTAGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCTGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTTGCGATTA
TTATGGTCGGCCACGTTACCAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCAGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTACTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43