Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGX68_RS08925 Genome accession   NZ_CP033735
Coordinates   1735984..1736403 (-) Length   139 a.a.
NCBI ID   WP_019468308.1    Uniprot ID   A0A0M2P185
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1730984..1741403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS08900 (EGX68_08905) thiE 1731492..1732130 (-) 639 WP_019467994.1 thiamine phosphate synthase -
  EGX68_RS08905 (EGX68_08910) thiM 1732133..1732912 (-) 780 WP_026034745.1 hydroxyethylthiazole kinase -
  EGX68_RS08910 (EGX68_08915) thiD 1732905..1733726 (-) 822 WP_019467992.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EGX68_RS08915 (EGX68_08920) tenA 1733719..1734408 (-) 690 WP_019467991.1 thiaminase II -
  EGX68_RS08920 (EGX68_08925) - 1734871..1735539 (-) 669 WP_046467856.1 transglycosylase family protein -
  EGX68_RS08925 (EGX68_08930) ssb 1735984..1736403 (-) 420 WP_019468308.1 single-stranded DNA-binding protein Machinery gene
  EGX68_RS08930 (EGX68_08935) - 1736593..1737033 (+) 441 WP_019468307.1 YwpF-like family protein -
  EGX68_RS08935 (EGX68_08940) fabZ 1737085..1737522 (-) 438 WP_019468306.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EGX68_RS08940 (EGX68_08945) murA 1737581..1738846 (-) 1266 WP_019468305.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EGX68_RS08945 (EGX68_08950) - 1738948..1739181 (-) 234 WP_019468304.1 DUF1146 family protein -
  EGX68_RS08950 (EGX68_08955) - 1739598..1740002 (-) 405 WP_019468303.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16019.41 Da        Isoelectric Point: 6.4650

>NTDB_id=325198 EGX68_RS08925 WP_019468308.1 1735984..1736403(-) (ssb) [Staphylococcus cohnii strain FDAARGOS_538]
MINSIVIVGRLTKDPKIYEKEGNKLATFCVAVTRNYKDKNQKTICDYLFCKAFGKIANNVEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIFIETIKFMSPRSKNEDEALFDPLPIASNQELINNFHLEENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=325198 EGX68_RS08925 WP_019468308.1 1735984..1736403(-) (ssb) [Staphylococcus cohnii strain FDAARGOS_538]
ATGATTAACAGTATTGTCATTGTAGGGAGACTAACAAAGGACCCTAAAATTTATGAGAAGGAGGGAAATAAACTAGCTAC
ATTTTGCGTAGCTGTTACAAGAAACTATAAAGATAAAAATCAAAAAACTATTTGTGATTATTTATTCTGTAAGGCATTCG
GAAAAATTGCTAATAATGTCGAAAAATATATCAATCAAGGCTCATTAGTTGGTATAACTGGACAAATGCAATCGAGAAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTTTATTGAAACTATTAAATTTATGTCCCCACGGTCTAAAAA
TGAAGATGAAGCACTTTTTGATCCACTTCCAATAGCCTCAAATCAAGAACTTATTAATAATTTTCATTTAGAGGAAAACG
ATATTTATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2P185

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

63.359

94.245

0.597
  ssb Staphylococcus aureus MW2

62.595

94.245

0.59

Multiple sequence alignment