Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   EGX68_RS04125 Genome accession   NZ_CP033735
Coordinates   757703..758266 (+) Length   187 a.a.
NCBI ID   WP_103211137.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 752703..763266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS04100 (EGX68_04100) - 753458..754966 (+) 1509 WP_019469088.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  EGX68_RS04105 (EGX68_04105) - 755174..755776 (-) 603 WP_019469089.1 CPBP family glutamic-type intramembrane protease -
  EGX68_RS04110 (EGX68_04110) - 755782..755967 (-) 186 WP_002508073.1 DUF2187 family protein -
  EGX68_RS04115 (EGX68_04115) - 756165..757154 (+) 990 WP_019469090.1 lipoate--protein ligase -
  EGX68_RS04120 (EGX68_04120) - 757233..757451 (-) 219 WP_019469091.1 IDEAL domain-containing protein -
  EGX68_RS04125 (EGX68_04125) comK/comK1 757703..758266 (+) 564 WP_103211137.1 competence protein ComK Regulator
  EGX68_RS04140 (EGX68_04140) - 758668..758950 (-) 283 Protein_776 tyrosine-type recombinase/integrase -
  EGX68_RS04145 (EGX68_04145) - 759780..760067 (-) 288 WP_230620704.1 hypothetical protein -
  EGX68_RS13720 - 760218..760406 (+) 189 Protein_778 hypothetical protein -
  EGX68_RS13925 - 760736..760825 (-) 90 WP_019469096.1 SAR1012 family small protein -
  EGX68_RS04150 (EGX68_04150) - 760932..761144 (-) 213 WP_019469097.1 TM2 domain-containing protein -
  EGX68_RS04155 (EGX68_04155) - 761321..761872 (+) 552 WP_040030134.1 GNAT family N-acetyltransferase -
  EGX68_RS04160 (EGX68_04160) - 761961..762899 (-) 939 WP_019469099.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.39 Da        Isoelectric Point: 9.6647

>NTDB_id=325179 EGX68_RS04125 WP_103211137.1 757703..758266(+) (comK/comK1) [Staphylococcus cohnii strain FDAARGOS_538]
MIQPYIIKKGDMTLQPCHLPVGQYEGTRVLRYKEDESTIKERTHKIIDRSCRFYGSSYVFKKEDTIRITGISSKPPILFT
PLFPTYFFPTHSDKKTQNTWINIHYVQSIKSLKDKKCRVNFVDNQSIVVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYRKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=325179 EGX68_RS04125 WP_103211137.1 757703..758266(+) (comK/comK1) [Staphylococcus cohnii strain FDAARGOS_538]
ATGATACAACCGTATATTATTAAAAAAGGTGATATGACATTACAGCCGTGCCATTTGCCTGTTGGCCAATATGAAGGAAC
ACGAGTACTAAGATATAAAGAAGACGAAAGTACGATAAAAGAACGCACCCACAAAATCATTGATCGTTCTTGTAGATTTT
ATGGTAGTAGCTATGTTTTTAAAAAAGAGGACACTATTCGTATTACAGGCATTAGTAGCAAGCCCCCAATTTTATTTACT
CCATTATTTCCCACTTATTTTTTCCCAACACATTCTGATAAAAAAACACAAAACACGTGGATTAATATCCATTATGTTCA
AAGTATCAAATCACTAAAAGATAAAAAGTGTAGAGTGAACTTTGTTGATAATCAATCTATCGTTGTGAACATCTCAGCTC
ATAGTATGCAACATCAATATTTAAATGGTATTTATTACTATTATATGATGGATAGAGCAGCAAGAGTTGCCACTTTTGAT
CCAGAGTCTCCCATAGATTATAGAAAACCGCAATTAAATATATATGAAGCACTCGCTAAGTATTCTTTATTTGAAAGTAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

53.005

97.861

0.519
  comK/comK1 Staphylococcus aureus N315

53.005

97.861

0.519

Multiple sequence alignment