Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   G2583_RS18875 Genome accession   NC_013941
Coordinates   3719221..3719697 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O55:H7 str. CB9615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3714221..3724697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G2583_RS18855 (G2583_3663) - 3716165..3717378 (+) 1214 WP_085959019.1 IS3-like element ISEc31 family transposase -
  G2583_RS18860 (G2583_3664) - 3717499..3717694 (+) 196 Protein_3644 DUF905 family protein -
  G2583_RS18865 (G2583_3665) - 3717812..3718630 (+) 819 WP_001234731.1 DUF932 domain-containing protein -
  G2583_RS18870 (G2583_3666) - 3718721..3719206 (+) 486 WP_000213700.1 antirestriction protein -
  G2583_RS18875 (G2583_3667) radC 3719221..3719697 (+) 477 WP_001186192.1 JAB domain-containing protein Machinery gene
  G2583_RS18880 (G2583_3668) - 3719760..3719981 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  G2583_RS18885 (G2583_3669) cbeA 3720055..3720423 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  G2583_RS18890 (G2583_3670) cbtA 3720512..3720888 (+) 377 Protein_3650 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  G2583_RS18895 (G2583_3671) - 3720885..3721067 (+) 183 Protein_3651 DUF5983 family protein -
  G2583_RS18900 (G2583_3672) istA 3721263..3722804 (+) 1542 WP_013009286.1 IS21-like element ISEc12 family transposase -
  G2583_RS18905 (G2583_3673) istB 3722819..3723565 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  G2583_RS18910 (G2583_3674) - 3723651..3723959 (+) 309 Protein_3654 DUF5983 family protein -
  G2583_RS18915 (G2583_3675) - 3723971..3724168 (+) 198 WP_000839256.1 DUF957 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=32513 G2583_RS18875 WP_001186192.1 3719221..3719697(+) (radC) [Escherichia coli O55:H7 str. CB9615]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=32513 G2583_RS18875 WP_001186192.1 3719221..3719697(+) (radC) [Escherichia coli O55:H7 str. CB9615]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment