Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CVO_RS08120 Genome accession   NZ_CP033720
Coordinates   1619943..1620194 (-) Length   83 a.a.
NCBI ID   WP_152298695.1    Uniprot ID   -
Organism   Sulfurimonas sp. CVO     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614943..1625194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO_RS08090 (CVO_08075) rlmB 1615320..1616069 (+) 750 WP_159571473.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CVO_RS08095 - 1616059..1617372 (-) 1314 WP_159571476.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  CVO_RS08100 (CVO_08085) - 1617568..1617963 (+) 396 WP_159571479.1 helix-turn-helix transcriptional regulator -
  CVO_RS08105 (CVO_08090) - 1617950..1618270 (-) 321 WP_159571482.1 thioredoxin family protein -
  CVO_RS08110 (CVO_08095) - 1618324..1619232 (+) 909 WP_159571485.1 AEC family transporter -
  CVO_RS08115 (CVO_08100) - 1619229..1619906 (+) 678 WP_159571488.1 endonuclease III domain-containing protein -
  CVO_RS08120 (CVO_08105) Cj0011c 1619943..1620194 (-) 252 WP_152298695.1 helix-hairpin-helix domain-containing protein Machinery gene
  CVO_RS08125 (CVO_08110) tkt 1620392..1622311 (-) 1920 WP_159571491.1 transketolase -
  CVO_RS08130 (CVO_08115) - 1622378..1623226 (-) 849 WP_159571494.1 polyprenyl synthetase family protein -
  CVO_RS08135 (CVO_08120) - 1623377..1623685 (-) 309 WP_159571496.1 YbaB/EbfC family nucleoid-associated protein -
  CVO_RS08140 (CVO_08125) panD 1623686..1624051 (-) 366 WP_159571499.1 aspartate 1-decarboxylase -
  CVO_RS08145 (CVO_08130) - 1624053..1624427 (-) 375 WP_159571502.1 (2Fe-2S) ferredoxin domain-containing protein -

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 9159.77 Da        Isoelectric Point: 9.2454

>NTDB_id=325107 CVO_RS08120 WP_152298695.1 1619943..1620194(-) (Cj0011c) [Sulfurimonas sp. CVO]
MKLLSLLIIGAALCFGAVDINKADKDELMNINGVGEAKASAIIEYRKKHNCFSSIEELKEVKGFGDKMLEKNRNNITASK
CKK

Nucleotide


Download         Length: 252 bp        

>NTDB_id=325107 CVO_RS08120 WP_152298695.1 1619943..1620194(-) (Cj0011c) [Sulfurimonas sp. CVO]
ATGAAGTTATTGTCACTACTGATTATTGGAGCTGCTCTATGTTTTGGAGCGGTAGATATTAACAAAGCAGATAAAGATGA
GCTGATGAACATAAACGGTGTCGGTGAAGCAAAAGCAAGCGCTATTATAGAGTACAGAAAAAAGCATAACTGTTTTAGCA
GTATTGAAGAGCTAAAAGAGGTCAAAGGCTTTGGCGATAAAATGTTAGAGAAAAACAGAAACAATATCACTGCAAGCAAG
TGTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.895

91.566

0.53
  comEA Lactococcus lactis subsp. cremoris KW2

51.667

72.289

0.373

Multiple sequence alignment