Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FIV54_RS12015 Genome accession   NZ_CP041037
Coordinates   2349821..2350417 (-) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus strain NP66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2344821..2355417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV54_RS12010 (FIV54_12025) - 2349511..2349616 (-) 106 Protein_2277 hypothetical protein -
  FIV54_RS12015 (FIV54_12030) recR 2349821..2350417 (-) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  FIV54_RS12020 (FIV54_12035) - 2350424..2350741 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  FIV54_RS12025 (FIV54_12040) dnaX 2350831..2352528 (-) 1698 WP_145326220.1 DNA polymerase III subunit gamma/tau -
  FIV54_RS12030 (FIV54_12045) - 2352597..2353121 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  FIV54_RS12035 (FIV54_12050) - 2353259..2353360 (-) 102 WP_001790661.1 hypothetical protein -
  FIV54_RS12045 (FIV54_12060) treR 2353764..2354492 (-) 729 WP_145326222.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=324713 FIV54_RS12015 WP_000559159.1 2349821..2350417(-) (recR) [Staphylococcus aureus strain NP66]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=324713 FIV54_RS12015 WP_000559159.1 2349821..2350417(-) (recR) [Staphylococcus aureus strain NP66]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment