Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCAH820_RS10200 Genome accession   NC_011773
Coordinates   1938980..1939267 (+) Length   95 a.a.
NCBI ID   WP_000648334.1    Uniprot ID   B7JKJ1
Organism   Bacillus cereus AH820     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933980..1944267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCAH820_RS10180 (BCAH820_2029) - 1935156..1935353 (+) 198 WP_001048094.1 DUF4083 domain-containing protein -
  BCAH820_RS10185 (BCAH820_2030) - 1935385..1935846 (+) 462 WP_000035009.1 NUDIX hydrolase -
  BCAH820_RS10190 (BCAH820_2031) nadE 1935893..1936711 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  BCAH820_RS10195 (BCAH820_2033) - 1936983..1938863 (+) 1881 WP_001025960.1 FtsX-like permease family protein -
  BCAH820_RS10200 (BCAH820_2034) abrB 1938980..1939267 (+) 288 WP_000648334.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCAH820_RS10205 (BCAH820_2035) - 1939542..1940492 (+) 951 WP_001089082.1 serine protease -
  BCAH820_RS10210 (BCAH820_2036) - 1940533..1940841 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  BCAH820_RS10215 (BCAH820_2037) - 1940949..1941884 (+) 936 WP_000877936.1 aldo/keto reductase -
  BCAH820_RS10220 (BCAH820_2038) - 1941933..1943108 (+) 1176 WP_000832288.1 MFS transporter -
  BCAH820_RS10225 (BCAH820_2039) - 1943296..1943520 (-) 225 WP_000162601.1 hypothetical protein -
  BCAH820_RS10230 (BCAH820_2040) - 1943605..1943952 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10707.23 Da        Isoelectric Point: 6.3179

>NTDB_id=32455 BCAH820_RS10200 WP_000648334.1 1938980..1939267(+) (abrB) [Bacillus cereus AH820]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITXDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=32455 BCAH820_RS10200 WP_000648334.1 1938980..1939267(+) (abrB) [Bacillus cereus AH820]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAKGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

94.737

0.505

Multiple sequence alignment