Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FIR93_RS05865 Genome accession   NZ_CP041031
Coordinates   1207715..1208452 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PT109     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202715..1213452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIR93_RS05835 (FIR93_05835) yfiL 1202873..1203238 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FIR93_RS05840 (FIR93_05840) aroF 1203448..1204518 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FIR93_RS05845 (FIR93_05845) tyrA 1204529..1205650 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FIR93_RS05850 (FIR93_05850) pheA 1205693..1206853 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  FIR93_RS05855 (FIR93_05855) pheL 1206952..1206999 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  FIR93_RS05860 (FIR93_05860) raiA 1207103..1207444 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FIR93_RS05865 (FIR93_05865) comL 1207715..1208452 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FIR93_RS05870 (FIR93_05870) rluD 1208587..1209567 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FIR93_RS05875 (FIR93_05875) yfiH 1209564..1210295 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  FIR93_RS05880 (FIR93_05880) clpC 1210425..1212998 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=324496 FIR93_RS05865 WP_000197686.1 1207715..1208452(-) (comL) [Escherichia coli strain PT109]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=324496 FIR93_RS05865 WP_000197686.1 1207715..1208452(-) (comL) [Escherichia coli strain PT109]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376