Detailed information NTG0324435

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FIP52_RS03445
• Genome accession: NZ_CP041029
• Coordinates: 696025..697197 (+)
• Length: 390 a.a.
• NCBI ID: WP_038693966.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain WJ4
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 691025..702197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIP52_RS03415 (FIP52_03415)	folK	691796..692245 (-)	450	WP_014938317.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
FIP52_RS03420 (FIP52_03420)	sppA	692267..694021 (+)	1755	WP_038693972.1	signal peptide peptidase SppA	-
FIP52_RS03425 (FIP52_03425)	dtd	694106..694552 (-)	447	WP_014938315.1	D-aminoacyl-tRNA deacylase	-
FIP52_RS03430 (FIP52_03430)	-	694558..695013 (-)	456	WP_038693969.1	hypothetical protein	-
FIP52_RS03435 (FIP52_03435)	greA	695115..695582 (+)	468	WP_004916971.1	transcription elongation factor GreA	-
FIP52_RS03440 (FIP52_03440)	-	695601..695987 (+)	387	WP_014938313.1	HIT family protein	-
FIP52_RS03445 (FIP52_03445)	clpX	696025..697197 (+)	1173	WP_038693966.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FIP52_RS03455 (FIP52_03455)	-	697283..699238 (+)	1956	WP_014938311.1	T9SS type A sorting domain-containing protein	-
FIP52_RS03460 (FIP52_03460)	-	699250..699501 (+)	252	WP_038693964.1	hypothetical protein	-
FIP52_RS03465 (FIP52_03465)	-	699563..700840 (+)	1278	WP_038693962.1	thioredoxin family protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43886.49 Da
• Isoelectric Point: 5.7920

>NTDB_id=324435 FIP52_RS03445 WP_038693966.1 696025..697197(+) (clpX) [Riemerella anatipestifer strain WJ4]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=324435 FIP52_RS03445 WP_038693966.1 696025..697197(+) (clpX) [Riemerella anatipestifer strain WJ4]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGACAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.979	97.179	0.505