Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FIP52_RS01180 Genome accession   NZ_CP041029
Coordinates   248161..248769 (+) Length   202 a.a.
NCBI ID   WP_014938738.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WJ4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 243161..253769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP52_RS01175 (FIP52_01175) - 244006..247401 (+) 3396 Protein_234 S8 family serine peptidase -
  FIP52_RS10845 - 247699..248058 (+) 360 WP_237190993.1 T9SS type A sorting domain-containing protein -
  FIP52_RS01180 (FIP52_01180) recR 248161..248769 (+) 609 WP_014938738.1 recombination mediator RecR Machinery gene
  FIP52_RS01185 (FIP52_01185) - 248776..249633 (+) 858 WP_014938737.1 glycosyltransferase family 2 protein -
  FIP52_RS01190 (FIP52_01190) secG 249672..250034 (-) 363 WP_013446734.1 preprotein translocase subunit SecG -
  FIP52_RS01195 (FIP52_01195) - 250176..252218 (-) 2043 WP_014938735.1 pitrilysin family protein -
  FIP52_RS01200 (FIP52_01200) - 252215..253543 (-) 1329 WP_014938734.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22438.78 Da        Isoelectric Point: 4.9948

>NTDB_id=324425 FIP52_RS01180 WP_014938738.1 248161..248769(+) (recR) [Riemerella anatipestifer strain WJ4]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGLALGEAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLEIGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=324425 FIP52_RS01180 WP_014938738.1 248161..248769(+) (recR) [Riemerella anatipestifer strain WJ4]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAGGCAGTAGAAGAAATATCGGGACTTCCAGGGATAGGTAGAAAATCAGCTCT
TAGGTTAGCTCTTCATTTGCTTAGACAACCTAGTTCACAAGGGCTAGCTCTAGGTGAGGCTATACAAAATCTAGTTACAG
AGATAAAATACTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAATACAGGGAAATTCAAAGGGAAATATTTGGT
TCTAGGAGGGAAAATATCACCTATGGAAGGCATTGGTCCTCAACAATTAAATATAGAAACCCTAGAAAGCAAACTAGAAA
TAGGGGAGATAGAGGAGGTTATTTTTGCACTATCTGCCACTATGGAGGGCGATACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCAAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

41.206

98.515

0.406
  recR Bacillus subtilis subsp. subtilis str. 168

39.286

97.03

0.381