Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | ECB94_RS06850 | Genome accession | NZ_CP033577 |
| Coordinates | 1478242..1478862 (+) | Length | 206 a.a. |
| NCBI ID | WP_006074436.1 | Uniprot ID | A0A084TG98 |
| Organism | Vibrio mediterranei strain 117-T6 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1473242..1483862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECB94_RS06830 (ECB94_06840) | - | 1473495..1474415 (-) | 921 | WP_038223002.1 | ABC transporter ATP-binding protein | - |
| ECB94_RS06835 (ECB94_06845) | - | 1474581..1476227 (-) | 1647 | WP_124940285.1 | SulP family inorganic anion transporter | - |
| ECB94_RS06840 (ECB94_06850) | can | 1476460..1477119 (+) | 660 | WP_006074438.1 | carbonate dehydratase | - |
| ECB94_RS06845 (ECB94_06855) | hpt | 1477184..1477714 (-) | 531 | WP_006074437.1 | hypoxanthine phosphoribosyltransferase | - |
| ECB94_RS06850 (ECB94_06860) | opaR | 1478242..1478862 (+) | 621 | WP_006074436.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| ECB94_RS06855 (ECB94_06865) | lpdA | 1478964..1480391 (-) | 1428 | WP_006074435.1 | dihydrolipoyl dehydrogenase | - |
| ECB94_RS06860 (ECB94_06870) | aceF | 1480665..1482557 (-) | 1893 | WP_124940286.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 206 a.a. Molecular weight: 23639.89 Da Isoelectric Point: 5.3141
>NTDB_id=324102 ECB94_RS06850 WP_006074436.1 1478242..1478862(+) (opaR) [Vibrio mediterranei strain 117-T6]
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVDIKENLTNILDGVVDMVIEDCHWNKVWFEWSTSTRDEVWPLFVSSNKTSQALIENMFIKAIERGEVCSQHNTK
HLTSLFHGICYSLFVEANRSSDGESIKSLTDCYMDMVCIYEKDSRH
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVDIKENLTNILDGVVDMVIEDCHWNKVWFEWSTSTRDEVWPLFVSSNKTSQALIENMFIKAIERGEVCSQHNTK
HLTSLFHGICYSLFVEANRSSDGESIKSLTDCYMDMVCIYEKDSRH
Nucleotide
Download Length: 621 bp
>NTDB_id=324102 ECB94_RS06850 WP_006074436.1 1478242..1478862(+) (opaR) [Vibrio mediterranei strain 117-T6]
ATGGACTCAATAGTAAAAAGACCTAGAACTCGCTTATCTCCACAAAAGCGCAAGTTACAGCTTATGGAGATTGCACTAGA
AGTATTCGCGAAACGCGGCATTGGTCGTGGAGGTCACGCGGATATCGCAGAAATTGCACAAGTTTCAGTAGCAACGGTAT
TCAACTACTTCCCAACACGAGAAGACTTGGTTGATGAAGTACTTAACCACGTCGTCTGTCAGTATTCCAACTTCTTATCA
AATACCATTGACCTTGATGTCGACATCAAAGAAAACCTAACCAATATTCTTGATGGTGTGGTGGATATGGTGATCGAAGA
CTGTCACTGGAATAAGGTATGGTTTGAATGGAGTACATCTACGCGCGATGAGGTTTGGCCATTGTTTGTTTCATCGAACA
AAACTAGCCAAGCATTGATTGAAAACATGTTCATTAAAGCCATTGAACGTGGCGAAGTCTGCTCTCAACACAACACTAAG
CATCTTACTAGCCTATTCCACGGTATTTGCTATTCACTGTTTGTTGAAGCTAATCGCAGTAGTGATGGTGAATCCATCAA
GTCGTTGACCGACTGCTATATGGATATGGTTTGCATCTACGAGAAAGATAGCCGCCACTAA
ATGGACTCAATAGTAAAAAGACCTAGAACTCGCTTATCTCCACAAAAGCGCAAGTTACAGCTTATGGAGATTGCACTAGA
AGTATTCGCGAAACGCGGCATTGGTCGTGGAGGTCACGCGGATATCGCAGAAATTGCACAAGTTTCAGTAGCAACGGTAT
TCAACTACTTCCCAACACGAGAAGACTTGGTTGATGAAGTACTTAACCACGTCGTCTGTCAGTATTCCAACTTCTTATCA
AATACCATTGACCTTGATGTCGACATCAAAGAAAACCTAACCAATATTCTTGATGGTGTGGTGGATATGGTGATCGAAGA
CTGTCACTGGAATAAGGTATGGTTTGAATGGAGTACATCTACGCGCGATGAGGTTTGGCCATTGTTTGTTTCATCGAACA
AAACTAGCCAAGCATTGATTGAAAACATGTTCATTAAAGCCATTGAACGTGGCGAAGTCTGCTCTCAACACAACACTAAG
CATCTTACTAGCCTATTCCACGGTATTTGCTATTCACTGTTTGTTGAAGCTAATCGCAGTAGTGATGGTGAATCCATCAA
GTCGTTGACCGACTGCTATATGGATATGGTTTGCATCTACGAGAAAGATAGCCGCCACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
73.399 |
98.544 |
0.723 |
| hapR | Vibrio cholerae C6706 |
70.352 |
96.602 |
0.68 |
| hapR | Vibrio cholerae strain A1552 |
70.352 |
96.602 |
0.68 |