Detailed information NTG0324100

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ECB94_RS06425
• Genome accession: NZ_CP033577
• Coordinates: 1383706..1387092 (+)
• Length: 1128 a.a.
• NCBI ID: WP_124940248.1
• Uniprot ID: A0A3G4VCT5
• Organism: Vibrio mediterranei strain 117-T6
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1378706..1392092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECB94_RS06405 (ECB94_06415)	erpA	1379034..1379375 (-)	342	WP_006072684.1	iron-sulfur cluster insertion protein ErpA	-
ECB94_RS06410 (ECB94_06420)	hemL	1379679..1380971 (+)	1293	WP_124940246.1	glutamate-1-semialdehyde 2,1-aminomutase	-
ECB94_RS06415 (ECB94_06425)	-	1381310..1382383 (+)	1074	WP_006072681.1	AI-2E family transporter	-
ECB94_RS06420 (ECB94_06430)	rsmC	1382450..1383472 (+)	1023	WP_124940247.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ECB94_RS06425 (ECB94_06435)	chiS	1383706..1387092 (+)	3387	WP_124940248.1	response regulator	Regulator
ECB94_RS06430 (ECB94_06440)	acnB	1387193..1389790 (-)	2598	WP_038224012.1	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127365.15 Da
• Isoelectric Point: 5.3545

>NTDB_id=324100 ECB94_RS06425 WP_124940248.1 1383706..1387092(+) (chiS) [Vibrio mediterranei strain 117-T6]
MFKLYRKQKFKRLQNTLMMAFLVLSITPLTVIALFFLNAHSQDLKDQSTSHLVSIRDTKKQQLINYFQAQESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGDDIEQAREHAQERYIQGSGNQVKTAILPDSSSYVGSERYRLLHKRYHRAFMEHLKRSDF
DDIILVDLAGNVTYSVYKNRYYGTNLETGEFSTQILGETFDRLKSEVTHKRKENEEYTPVVISDFALQDDQQYAWLGAPI
IQQGYLHSYAMFRLPIKGITKLITDGKPDDIKLLLVGSDHAAKILGLEQDTIDNSNEVISQALSGLTMVGSYTNAKGEDY
FAAFTPIQLNETNWALVAETPEAIAFASVKQLEKLFVIAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERASGGDLEPS
IISADRKDEIGRLALSFERMRRSIKEKIELIKSQNQELEQNLVTIKKQNEELQLANKLKDEFLATTSHELRTPLHGMIGI
AEAMISGANGPIGANHKYQLDIIVNSGQRLAGLVDDLLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRII
NQVLEPLPYVSADPQRLEQVLYNLVGNAIKYTNEGKIVLSATAMDDHIRVQVVDTGQGIPAQQLEHIFEPLVQAGHDSGH
YRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLPLATQEEIEHISQLGQNSHFHIAEPTEINPEEEEVLPENPD
GPVLLVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEKPDLLLLDIMMPGMSGFEVCETIREQYDHAALPIIM
LTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHLQASKAEERRAENQLLKYEIKQRALVEASLLETQGRLIEQLD
SAPEAILCIREDLKVQFANQSAGRMFKRSVEQLKRSNVEELIAPKFIHLSQEHYCGDIDIFVDDVRQHINTDILTLPEGS
GLKSIYIFEQGQSLDQTRVKNLETAIDALSRYAIEGDKAKLLELKELGGEFTQLADKAVDEEKSRPELMRELLVDTMTNA
LEYWESVTGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSVEYILDHCHRQGPERDHIIALRD
KLQKLLTN

Nucleotide

• Length: 3387 bp

>NTDB_id=324100 ECB94_RS06425 WP_124940248.1 1383706..1387092(+) (chiS) [Vibrio mediterranei strain 117-T6]
ATGTTCAAGTTGTATCGAAAACAGAAATTCAAGCGACTGCAAAACACCTTGATGATGGCTTTTTTGGTGCTCAGCATTAC
ACCCTTGACGGTCATCGCGCTATTCTTTCTCAACGCACACAGTCAGGATCTAAAAGATCAAAGTACCTCTCATCTGGTAT
CGATAAGAGATACTAAAAAACAGCAGTTGATCAACTACTTTCAAGCTCAAGAGTCTGAAGTCATGGGATTCGTACGTTCA
GAACTCGCTTATGCCAGTGGTGGACGATTCTATGGACTGGTAAATGCGTTTCAGCGCCTCGGTGACGATATAGAACAAGC
AAGAGAACATGCGCAAGAACGCTATATTCAAGGTTCAGGCAATCAAGTAAAAACCGCAATCCTTCCAGACTCTAGTAGTT
ATGTAGGAAGTGAGCGCTACCGTCTTCTACACAAGCGCTATCATAGGGCGTTTATGGAGCACCTGAAACGCTCAGATTTT
GATGACATCATACTGGTTGATCTTGCAGGCAACGTCACCTACTCCGTCTATAAAAATCGCTATTACGGCACAAATTTAGA
AACGGGCGAGTTTTCAACTCAGATCCTTGGCGAAACCTTTGATCGTTTGAAATCTGAAGTCACTCACAAGCGCAAAGAAA
ACGAAGAGTACACCCCGGTTGTTATTTCCGATTTTGCCCTACAAGATGACCAACAGTACGCTTGGCTTGGTGCACCGATT
ATCCAGCAAGGTTATCTTCACAGTTATGCCATGTTCAGGCTTCCCATCAAAGGAATCACTAAACTCATCACTGACGGCAA
ACCAGATGATATTAAGCTGCTGCTGGTCGGTAGTGACCATGCCGCCAAGATACTTGGGCTTGAACAAGACACCATAGACA
ACAGCAACGAAGTTATCTCACAAGCCTTATCGGGTCTCACCATGGTGGGTAGCTACACCAATGCCAAAGGCGAAGACTAC
TTTGCGGCATTCACTCCTATTCAACTCAATGAAACCAATTGGGCACTAGTTGCCGAAACACCAGAGGCCATCGCCTTTGC
TAGCGTTAAGCAACTAGAAAAACTGTTTGTTATTGCAATGCTGACCGCGATTGTGCTGGTTGTCATTGCTTCACACTACC
TTTCTAACTTTATTACGTCGCCACTGCTTAAGCTTACTTGGGCAGCCGAAAGAGCCTCTGGTGGAGACTTAGAACCTTCG
ATTATTAGCGCAGACCGTAAAGATGAGATTGGCCGATTGGCTCTGAGTTTCGAACGTATGAGGCGCTCAATAAAAGAGAA
GATCGAGCTCATTAAGAGTCAGAACCAAGAGCTAGAGCAGAATTTAGTCACTATTAAAAAGCAAAACGAAGAATTGCAGC
TAGCAAACAAGCTGAAAGATGAATTCCTTGCAACCACCTCTCACGAACTTCGCACTCCACTTCACGGCATGATTGGGATT
GCAGAGGCCATGATCTCAGGTGCCAATGGGCCAATAGGCGCCAACCATAAATATCAGCTTGATATCATCGTTAACAGTGG
CCAGCGCCTTGCTGGATTGGTGGACGATCTTCTCGATTATCACAAGATGCGTTACGGCAACTTAGATATTGAACGTTCTG
CTATCAGCTTAACCGGTGCAACACAGCTGGTCTTGGAGTTGTCACATCACTTGCTTGGTGAAAAGAAGATTCGAATTATC
AATCAAGTCCTCGAACCATTGCCTTATGTCTCAGCCGACCCACAGCGCTTAGAACAGGTACTTTATAACCTTGTAGGTAA
TGCCATCAAATACACCAATGAAGGTAAGATCGTATTATCGGCCACCGCCATGGATGATCATATTCGTGTACAAGTAGTAG
ATACTGGCCAAGGGATTCCTGCTCAGCAGCTTGAACATATTTTCGAGCCGTTGGTTCAAGCTGGCCATGATTCAGGTCAT
TACCGCCAAGGTGCAGGGCTTGGCTTATCGATAAGTCGACAGCTTATTGAGTTAATGGGCGGTTCTCTTTATGTCAGTAG
TCAGCCTCATGTTGGCACCACGTTCAGCTTCACCCTTCCTTTAGCGACGCAGGAAGAAATAGAGCATATTTCTCAATTAG
GACAGAATAGTCACTTCCATATCGCCGAGCCGACTGAGATCAATCCCGAAGAAGAGGAAGTCCTTCCTGAGAATCCTGAT
GGACCAGTGCTGCTTGTCGCCGATGATGAGCCAGTGAATTTACGTATCCTAGAGAGCTTTTTAAGACTAGAAGGCTATCA
AGTGAAACTGGCCAAAGATGGCTTAGAAACACTGGATATTATTGAGCATGAAAAACCAGACTTACTGCTGCTCGATATTA
TGATGCCTGGAATGAGTGGCTTTGAAGTGTGTGAAACCATTCGTGAACAATACGATCATGCCGCGCTGCCTATCATTATG
CTCACTGCTTTGAATCAATCAGAAGACAGAGTTCGTGGTTTTGAGCTCGGTGCCAATGACTACCTTGCAAAACCGTTCAG
TAAGCCGGAGCTAGCGGCACGTATCGCCGCTCACCTTCAAGCAAGCAAAGCTGAAGAGAGACGCGCCGAAAATCAACTTC
TCAAGTATGAAATCAAGCAACGTGCGTTGGTTGAAGCAAGTTTGTTAGAAACACAAGGGCGTTTGATCGAGCAACTCGAT
AGTGCGCCGGAAGCGATTCTATGCATCCGAGAAGACCTCAAGGTACAGTTTGCTAACCAAAGTGCCGGACGTATGTTTAA
ACGCAGTGTTGAACAGCTCAAACGCTCCAATGTTGAAGAGCTAATTGCGCCTAAATTTATTCACTTGTCTCAGGAGCATT
ATTGCGGCGATATCGATATTTTTGTCGATGATGTACGCCAACATATAAACACCGATATTCTCACCTTACCTGAAGGTTCG
GGGTTAAAGAGCATTTACATATTCGAACAAGGGCAGTCCCTAGATCAAACGCGCGTGAAGAACCTAGAAACCGCTATTGA
TGCGTTATCTCGATATGCGATTGAAGGTGATAAGGCGAAACTGCTGGAACTCAAAGAGCTGGGCGGAGAATTTACTCAAT
TAGCGGATAAAGCCGTCGATGAAGAGAAGTCTCGTCCTGAATTGATGCGCGAGTTATTGGTAGATACCATGACCAATGCG
CTGGAGTATTGGGAAAGTGTTACTGGACAAAGCAAATTTGCCTTTGCTGAACAAAGTGGCTTGTGGCGTGTTTACTTGGA
CCGCAGCACCTTGCAAACGCGCACATTGGATAAGTATTTGCGCGTAGAGACTTTACCTAAAACACCTCGTTGGCGCACAG
TACTCAGCTCAGTAGAATACATACTCGACCATTGTCACCGTCAAGGCCCAGAGCGTGACCATATTATTGCTCTGCGCGAC
AAGCTGCAAAAGTTGCTGACCAATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (725-835)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (374-425)

3D structure

• AlphaFold DB: A0A3G4VCT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.479	100	0.715