Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ECB94_RS03570 Genome accession   NZ_CP033577
Coordinates   776700..778097 (-) Length   465 a.a.
NCBI ID   WP_124940002.1    Uniprot ID   A0A3G4V6T6
Organism   Vibrio mediterranei strain 117-T6     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 771700..783097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB94_RS03535 (ECB94_03545) moaE 772365..772823 (-) 459 WP_124940001.1 molybdopterin synthase catalytic subunit MoaE -
  ECB94_RS03540 (ECB94_03550) moaD 772825..773070 (-) 246 WP_006072952.1 molybdopterin synthase sulfur carrier subunit -
  ECB94_RS03545 (ECB94_03555) moaC 773067..773546 (-) 480 WP_006072951.1 cyclic pyranopterin monophosphate synthase MoaC -
  ECB94_RS03550 (ECB94_03560) moaB 773563..774075 (-) 513 WP_006072950.1 molybdenum cofactor biosynthesis protein B -
  ECB94_RS03555 (ECB94_03565) moaA 774120..775109 (-) 990 WP_031494455.1 GTP 3',8-cyclase MoaA -
  ECB94_RS03560 (ECB94_03570) - 775407..776291 (+) 885 WP_006072948.1 YvcK family protein -
  ECB94_RS03565 (ECB94_03575) luxU 776356..776703 (-) 348 WP_006072947.1 quorum-sensing phosphorelay protein LuxU -
  ECB94_RS03570 (ECB94_03580) luxO 776700..778097 (-) 1398 WP_124940002.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ECB94_RS03575 (ECB94_03585) uvrB 778230..780260 (-) 2031 WP_096442393.1 excinuclease ABC subunit UvrB -
  ECB94_RS27770 rsxA 781245..781826 (+) 582 WP_006072943.1 electron transport complex subunit RsxA -
  ECB94_RS03590 (ECB94_03600) rsxB 781826..782407 (+) 582 WP_006072942.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51640.91 Da        Isoelectric Point: 5.2425

>NTDB_id=324097 ECB94_RS03570 WP_124940002.1 776700..778097(-) (luxO) [Vibrio mediterranei strain 117-T6]
MQQLIDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLAHRTPDLILLDLRLPDMTGMDVLDAVKEFN
PDVPVIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRNEINDSSSQNYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
REEDVIEIAYSLLGFMSHEEGKSFVRFAQDVIDRFIQYEWPGNVRQLQNVLRNVVVLNQGKEIELSMLPPPLNEPAIKPA
NSSNVVSVSFGPQDIQPLWKTEKTTIEQAIEACDGNIPQAAKHLDVSPSTIYRKIQAWNASEKKA

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=324097 ECB94_RS03570 WP_124940002.1 776700..778097(-) (luxO) [Vibrio mediterranei strain 117-T6]
ATGCAACAACTAATCGACGAGCCCAAGTCTCGCTATCTACTTATGGTAGAAGACACGGCTTCCGTTGCTGCGCTGTATCG
CTCATATCTATCTCCATTGGGTATAGATATCAATATCGTTGGAAACGGTAGAGATGCAATTCAAAGTTTAGCGCACCGGA
CGCCTGACCTCATTCTACTGGATTTACGACTTCCCGACATGACGGGTATGGATGTATTGGACGCTGTAAAAGAATTCAAT
CCCGATGTACCTGTTATCTTTATGACAGCTCATGGTTCTATCGACATTGCGGTAGACGCTATGCAGCATGGCGCGCAGGA
CTTTTTAATCAAACCCTGCGAAGCCGACCGACTTCGCGTGACGGTAACCAACGCCATCCGCAAAGCTTCTAAGCTACGTA
ATGAGATTAATGATTCTAGTAGCCAAAACTACCAAGGATTCATTGGCAGCAGCCAACCTATGCAGGCGGTTTACCGCACT
ATTGACTCTGCCGCTTCCAGTAAGGCCAGTATCTTTATTACTGGAGAAAGTGGTACAGGTAAGGAAGTGTGCGCAGAGGC
GATCCACGCTGCGAGTAAACGAGGCGATAAGCCATTTATTGCGATCAACTGTGCCGCCATACCAAAAGATCTTATTGAGA
GTGAGCTGTTTGGTCATGTCAAAGGTGCCTTTACGGGGGCGGCAAGTGACCGACAAGGTGCGGCAGAGCTCGCTGATGGC
GGCACGCTGTTTCTTGATGAGCTCTGTGAAATGGATCTTGATCTACAAACTAAACTACTGCGCTTTATTCAAACGGGTAC
CTTCCAAAAAGTGGGGTCTTCACGTATGAAGAAAGTGGATGTACGTTTCGTATGTGCGACCAACCGAGATCCTTGGAAAG
AAGTACAAGAAGGGCGATTTAGAGAAGATTTATACTACCGACTTTATGTTATCCCTCTGCATTTGCCACCGCTTCGAGAG
CGTGAAGAAGATGTGATTGAAATTGCCTACTCGTTATTAGGCTTTATGTCGCATGAAGAAGGTAAGAGTTTTGTGCGCTT
TGCTCAAGACGTCATTGACCGCTTCATTCAGTACGAGTGGCCGGGTAATGTCCGCCAATTACAGAATGTACTGCGCAATG
TGGTGGTATTGAATCAGGGTAAAGAAATAGAGTTAAGTATGTTGCCGCCGCCTTTGAATGAGCCAGCGATTAAGCCCGCA
AACTCAAGTAATGTGGTATCAGTATCATTTGGGCCACAGGACATCCAACCTTTGTGGAAAACTGAAAAAACCACCATAGA
GCAAGCGATAGAAGCGTGTGACGGTAACATTCCACAAGCAGCGAAACACTTGGACGTGAGTCCTTCGACAATCTACCGCA
AAATACAGGCATGGAATGCAAGCGAGAAGAAAGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G4V6T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.111

96.774

0.804
  pilR Pseudomonas aeruginosa PAK

38.739

95.484

0.37

Multiple sequence alignment