Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FIU16_RS12435 Genome accession   NZ_CP041002
Coordinates   2321234..2321890 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain FDAARGOS_772     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316234..2326890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU16_RS12405 (FIU16_12405) yecA 2317485..2318150 (-) 666 WP_000847876.1 UPF0149 family protein YecA -
  FIU16_RS12425 (FIU16_12425) pgsA 2318800..2319348 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FIU16_RS12430 (FIU16_12430) uvrC 2319405..2321237 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FIU16_RS12435 (FIU16_12435) letA 2321234..2321890 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FIU16_RS28080 (FIU16_12440) - 2322032..2322148 (+) 117 Protein_2315 transcriptional regulator -
  FIU16_RS12445 (FIU16_12445) yecU 2322186..2322362 (+) 177 WP_000590344.1 protein YecU -
  FIU16_RS12450 (FIU16_12450) yecF 2322349..2322573 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  FIU16_RS12455 (FIU16_12455) sdiA 2322641..2323363 (-) 723 WP_001152713.1 transcriptional regulator SdiA -
  FIU16_RS12460 (FIU16_12460) tcyN 2323593..2324345 (-) 753 WP_001272980.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FIU16_RS12465 (FIU16_12465) tcyL 2324342..2325010 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  FIU16_RS12470 (FIU16_12470) dcyD 2325025..2326011 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=324072 FIU16_RS12435 WP_000611335.1 2321234..2321890(-) (letA) [Escherichia coli strain FDAARGOS_772]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=324072 FIU16_RS12435 WP_000611335.1 2321234..2321890(-) (letA) [Escherichia coli strain FDAARGOS_772]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486