Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EEB07_RS02090 Genome accession   NZ_CP033576
Coordinates   407058..407825 (-) Length   255 a.a.
NCBI ID   WP_123117336.1    Uniprot ID   -
Organism   Bacillus velezensis strain NY12-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 402058..412825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS02070 (EEB07_02070) - 402260..403072 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  EEB07_RS02075 (EEB07_02075) ccpN 403098..403736 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  EEB07_RS02080 (EEB07_02080) glyS 403837..405876 (-) 2040 WP_029973407.1 glycine--tRNA ligase subunit beta -
  EEB07_RS02085 (EEB07_02085) glyQ 405869..406756 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  EEB07_RS02090 (EEB07_02090) recO 407058..407825 (-) 768 WP_123117336.1 DNA repair protein RecO Machinery gene
  EEB07_RS02095 (EEB07_02095) - 407862..408005 (-) 144 WP_007408286.1 YqzL family protein -
  EEB07_RS02100 (EEB07_02100) era 408161..409066 (-) 906 WP_007408285.1 GTPase Era -
  EEB07_RS02105 (EEB07_02105) - 409047..409457 (-) 411 WP_003152976.1 cytidine deaminase -
  EEB07_RS02110 (EEB07_02110) - 409581..409955 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  EEB07_RS02115 (EEB07_02115) ybeY 409936..410409 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  EEB07_RS02120 (EEB07_02120) - 410410..412542 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29321.91 Da        Isoelectric Point: 8.5625

>NTDB_id=324029 EEB07_RS02090 WP_123117336.1 407058..407825(-) (recO) [Bacillus velezensis strain NY12-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFISELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSVRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=324029 EEB07_RS02090 WP_123117336.1 407058..407825(-) (recO) [Bacillus velezensis strain NY12-2]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCTCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment