Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SMUNN2025_RS03260 Genome accession   NC_013928
Coordinates   645704..648946 (+) Length   1080 a.a.
NCBI ID   WP_012997660.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640704..653946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS03240 (SmuNN2025_0607) cas5e 641044..641760 (+) 717 WP_002283064.1 type I-E CRISPR-associated protein Cas5/CasD -
  SMUNN2025_RS03245 (SmuNN2025_0608) cas6e 641760..642407 (+) 648 WP_002267332.1 type I-E CRISPR-associated protein Cas6/Cse3/CasE -
  SMUNN2025_RS03250 (SmuNN2025_0609) cas1e 642410..643351 (+) 942 WP_012997659.1 type I-E CRISPR-associated endonuclease Cas1e -
  SMUNN2025_RS03255 (SmuNN2025_0610) cas2e 643353..644255 (+) 903 WP_002283928.1 type I-E CRISPR-associated endoribonuclease Cas2e -
  SMUNN2025_RS03260 (SmuNN2025_0611) rexB 645704..648946 (+) 3243 WP_012997660.1 ATP-dependent nuclease subunit B Machinery gene
  SMUNN2025_RS03265 (SmuNN2025_0612) rexA 648936..652574 (+) 3639 WP_012997661.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMUNN2025_RS03270 (SmuNN2025_0613) lacR 652799..653554 (+) 756 WP_002265225.1 transcriptional regulator LacR -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 123926.94 Da        Isoelectric Point: 6.0543

>NTDB_id=32400 SMUNN2025_RS03260 WP_012997660.1 645704..648946(+) (rexB) [Streptococcus mutans NN2025]
MKLLYTDIPYNITEILAEEAQIAAKAGKRVFYIAPNSLSFEKERAVLETLPERASFAITITRFEQMARYFVLNDIHQGET
IDDNGLAMVFYRALSSFSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAEKQEDLIKIFTEVETILSA
GHFDNQSKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLLHEKGVDIIIGTYISQKAYRSTFSNGNVYQAS
LDFIRGLAGKFQTKPEYVVSKQEALPAFTKLSQLFESRHDFSDSQLVLTDKDKEHVTIWDVINQKEEVEHVAKSIRRKLY
EGHRYKDILVLLGDVDAYKLQIGKIFDKYEIPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQ
NQLDKLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQAQKGDSILQKLTNFLEAISLTNNF
SKLIQGVSDTEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNK
FVFALGMTQSHFPKIVQNKSLISDEERAKINEATPNNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDN
TSSYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSVAVRYLRQKLAKEGLTIPE
VNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLYFLQYVLGLQELETIHPDARNHGTYLHRVFELVMQDQST
DDFDSKLNRAIDITNHEDSFHLVYNEDEESRYALGILEDIARSTATILKGDNPVQAESEEEAFELMLDQAVKIRGVIDRI
DRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLNETDKIFGAMYLHMQEPKTDLANMKSIEKIPETV
HKNLSYKGLFLEDEKAHLANGKYHLHDAVYSQKEVDLLLDYNKRLYRSAAKQIRKGNFLINPYSQDGKSVQGEQLKAITH
FEADRHMPYARKLYQLPRKEKRQGFLALMQSKKEEEGNDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=32400 SMUNN2025_RS03260 WP_012997660.1 645704..648946(+) (rexB) [Streptococcus mutans NN2025]
ATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGG
CAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGG
CTTCCTTTGCTATTACCATTACGCGTTTTGAGCAAATGGCACGTTATTTTGTTTTAAATGATATTCATCAGGGCGAAACC
ATTGATGATAATGGACTTGCCATGGTTTTTTATCGTGCTTTATCCAGTTTTTCAGACCAAGATTTGCGTGTTTTTGGGCG
TCTTAAGCAAGATGCTCATTTTATCAATCAATTGGTGGATTTGTATAAGGAACTCAAGGCTTCTAATCTGACTGTCTTAG
AATTAAATCAGCTAAATTCGGCTGAAAAGCAGGAAGATTTGATTAAGATTTTTACAGAGGTTGAAACCATTTTAAGTGCT
GGCCATTTTGATAATCAAAGCAAGATTGCCTTCTTTGCACAACAGATCAAATTCGGTCATTTAGATACGGCTTTGCAGGA
TTTGACAATTGTTGTTGATGGTTTCACACGTTTTTCTGCTGAAGAAGAAAACCTGATAGGACTGTTACATGAAAAAGGTG
TTGACATTATCATTGGGACTTATATTAGTCAAAAAGCTTATCGTTCAACTTTTTCGAATGGGAATGTCTATCAGGCTAGC
CTTGATTTCATTCGTGGTTTGGCTGGTAAATTTCAAACCAAACCAGAATATGTGGTATCAAAGCAAGAAGCTTTGCCTGC
CTTTACCAAACTTTCTCAGCTATTTGAAAGTCGTCATGATTTTTCGGACAGTCAGCTGGTCTTGACAGATAAGGACAAGG
AACATGTAACTATCTGGGATGTCATTAATCAAAAAGAAGAAGTGGAACATGTTGCTAAGAGCATTCGCCGGAAACTCTAT
GAAGGTCATCGTTACAAGGATATTTTGGTCCTTCTTGGGGATGTGGATGCCTATAAACTGCAGATTGGCAAGATTTTTGA
TAAGTATGAAATTCCCTATTATTTTGGCAAAGCGGAGTCCATGAGTTCGCACCCGCTGGTTCATTTTGTGGATTCTTTGG
AGCGGGTTAAACGTTATAATTTTCGTGCTGAGGATGTCATGAATCTGCTCAAATCAGGCCTATATGGCAAAATCAGGCAA
AATCAGTTAGATAAATTGGAGCAGTACGTCATTTATGCTGATATTAAAGGAAAAACAAAGTTTTTTAAGGACTTTACGCT
AGATAATCATGGGCAATTTGATCTAAAAGCCTTAAATAAACTGCGAGCAGAAGTCATGTCACCTTTACAAGAGCTGGTTA
AAATACAGGCTCAAAAGGGAGACAGTATCCTGCAAAAATTGACCAACTTTTTAGAAGCCATTTCTTTAACGAATAATTTT
TCAAAATTAATCCAAGGTGTCAGTGACACTGAGCAGGAAAAGAACGAGCAAGTTTGGAAAACTTTTACGGTTATTTTAGA
GCAATTTCATACGATTTTTGGACAAGAAAAAATGAAGTTGGCTGATTTTCTGGCACTCTTACGCAGCGGCATGCTGGCGG
CTGATTATCGGACGGTTCCTGCCAGTGTTGATGTTGTGACAGTTAAGTCTTATGATTTGGTGGAGCCCCATAGCAATAAA
TTTGTTTTTGCTCTGGGAATGACCCAGTCTCATTTTCCTAAAATTGTCCAAAATAAGAGTCTTATTTCGGATGAAGAACG
TGCAAAAATCAATGAAGCAACTCCTAACAATCGTCGTTTTGATATTGTCACTAAGGAAAATCTCAAGAAAAATCATTTCA
CCGCCCTGTCACTCTTCAATGCGGCCACTCAGGAATTGGTCTTAACCTTGCCGCAGATTTTAAACGAGGCAGAGGACAAC
ACCTCCTCCTATTTGCTTGAATTGCAAGATATGGGTGTGCCAGTTGTCGAAAAGGGGCGCAATCGTTTAGCTGCGGATCC
AGAAGATATTGGCAATTACAAGGCGCTTTTGTCGCGTGTGATTGAGCTTAACCGCTCTGCTATTGACCAAGAATTATCTA
AAGAAGAGCAGACCTTTTGGTCAGTTGCTGTTCGCTATTTACGCCAAAAATTGGCAAAAGAAGGACTTACGATTCCTGAA
GTGAACGATAAGATGCAGACCAAGCAGGTTGCTGCAGAGGTTATGGCAGCACGTTTTCCAATAGATCAACCTTTAAATCT
ATCATCGTCTGCCCTGACAACTTTTTACAATAATCAGTATCTCTATTTCCTTCAATATGTCCTTGGTTTGCAAGAGCTTG
AAACGATTCATCCTGATGCTAGAAATCATGGGACTTATTTGCACCGCGTGTTTGAATTGGTTATGCAAGATCAATCTACT
GATGATTTTGACAGTAAATTAAATCGTGCCATTGATATAACCAACCATGAGGATAGCTTTCACTTGGTTTATAATGAAGA
TGAGGAAAGTCGCTATGCTTTGGGTATTTTAGAAGATATTGCTCGTAGTACGGCTACCATTTTAAAAGGGGATAATCCTG
TTCAGGCAGAAAGTGAAGAAGAAGCCTTTGAGTTAATGCTGGATCAGGCTGTTAAAATCAGAGGGGTTATTGATCGCATT
GATCGCTTGTCAGATGGCAGTTTAGGAATTGTTGATTATAAGTCAAGTAAAAATACCTTTGATCTGCAAAAATTTTACAA
TGGACTCAGTCCGCAGTTAGTGACTTATATAGAAGCTCTTCGGTCTTGTAAAAATTTGAATGAGACAGATAAGATTTTTG
GAGCCATGTATCTTCATATGCAGGAACCTAAAACTGATTTAGCCAATATGAAATCCATCGAAAAAATTCCGGAAACGGTT
CATAAGAATTTAAGTTATAAGGGACTCTTTTTAGAAGATGAAAAAGCACATTTGGCTAATGGGAAATACCATTTGCATGA
TGCTGTCTATAGTCAAAAAGAAGTTGATTTGCTGCTTGATTATAATAAAAGACTCTATCGCAGTGCCGCAAAGCAAATCA
GAAAAGGAAACTTTCTCATTAACCCCTACAGTCAGGATGGCAAATCTGTTCAGGGAGAACAGCTGAAGGCTATTACACAT
TTTGAAGCAGATCGCCACATGCCTTATGCTCGTAAACTTTATCAGCTGCCACGCAAAGAAAAACGTCAGGGTTTCTTGGC
GTTAATGCAGTCTAAAAAAGAGGAGGAAGGCAATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.548

99.352

0.443

Multiple sequence alignment