Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BCG9842_RS06165 Genome accession   NC_011772
Coordinates   1234373..1234696 (-) Length   107 a.a.
NCBI ID   WP_000578865.1    Uniprot ID   B7IMB2
Organism   Bacillus cereus G9842     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229373..1239696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCG9842_RS06140 (BCG9842_B4016) - 1229752..1231038 (+) 1287 WP_000247024.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BCG9842_RS06145 (BCG9842_B4015) sipW 1231233..1231802 (+) 570 WP_000767805.1 signal peptidase I SipW -
  BCG9842_RS06150 (BCG9842_B4014) - 1231863..1232450 (+) 588 WP_000172852.1 CalY family protein -
  BCG9842_RS06155 (BCG9842_B4013) - 1232570..1233319 (+) 750 WP_079997101.1 DUF4047 domain-containing protein -
  BCG9842_RS06160 (BCG9842_B4012) calY 1233707..1234300 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  BCG9842_RS06165 (BCG9842_B4011) sinR 1234373..1234696 (-) 324 WP_000578865.1 helix-turn-helix domain-containing protein Regulator
  BCG9842_RS06170 (BCG9842_B4010) - 1234776..1234910 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  BCG9842_RS06175 (BCG9842_B4009) inhA1 1235253..1237640 (+) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  BCG9842_RS06180 (BCG9842_B4008) - 1237812..1239179 (+) 1368 WP_000028385.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12351.25 Da        Isoelectric Point: 9.9745

>NTDB_id=32401 BCG9842_RS06165 WP_000578865.1 1234373..1234696(-) (sinR) [Bacillus cereus G9842]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=32401 BCG9842_RS06165 WP_000578865.1 1234373..1234696(-) (sinR) [Bacillus cereus G9842]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTTCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7IMB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment