Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SMUNN2025_RS03265 Genome accession   NC_013928
Coordinates   648936..652574 (+) Length   1212 a.a.
NCBI ID   WP_012997661.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643936..657574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS03260 (SmuNN2025_0611) rexB 645704..648946 (+) 3243 WP_012997660.1 ATP-dependent nuclease subunit B Machinery gene
  SMUNN2025_RS03265 (SmuNN2025_0612) rexA 648936..652574 (+) 3639 WP_012997661.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMUNN2025_RS03270 (SmuNN2025_0613) lacR 652799..653554 (+) 756 WP_002265225.1 transcriptional regulator LacR -
  SMUNN2025_RS03275 (SmuNN2025_0614) lacA 653862..654290 (+) 429 WP_002262463.1 galactose-6-phosphate isomerase subunit LacA -
  SMUNN2025_RS03280 (SmuNN2025_0615) lacB 654316..654831 (+) 516 WP_002262464.1 galactose-6-phosphate isomerase subunit LacB -
  SMUNN2025_RS03285 (SmuNN2025_0616) lacC 654850..655782 (+) 933 WP_002277662.1 tagatose-6-phosphate kinase -
  SMUNN2025_RS03290 (SmuNN2025_0617) lacD 655787..656764 (+) 978 WP_002277661.1 tagatose-bisphosphate aldolase -
  SMUNN2025_RS03295 (SmuNN2025_0618) lacF 656780..657094 (+) 315 WP_012997666.1 PTS lactose transporter subunit IIA -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139190.88 Da        Isoelectric Point: 4.8349

>NTDB_id=32401 SMUNN2025_RS03265 WP_012997661.1 648936..652574(+) (rexA) [Streptococcus mutans NN2025]
MTFKSFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFT
VKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLK
NDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV
KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDNLYGRDGLGKLANDIATLIPSGNDVT
VAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFALDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR
QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLV
AKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL
RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRKFSLLNSLYDLIWKI
YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKG
LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPIVKVSMDTLPYQLNKRELRLATLSEQMRLL
YVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG
SLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKF
ELPQFSKKAGQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV
YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYQGQMTLYAQALSQSYNIQQVDSYLI
LLGGEKLEVVEI

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=32401 SMUNN2025_RS03265 WP_012997661.1 648936..652574(+) (rexA) [Streptococcus mutans NN2025]
ATGACCTTTAAATCATTTTTAACAGATCAAGAAATAGCTTCCTTACAAATTCAAGAAGCACAGTCTGATAAGAAACAAAA
ACGAACACCTGAGCAAATTGAGGCCATTTACACTTCAGGAACCAATATTTTGGTTTCTGCCTCTGCTGGTTCAGGAAAAA
CCTTTGTGATGATTGAGCGGATTATGGATAAAATTCTGCGTGGTGTAACGATTGATCAGCTTTTTATTTCCACCTTTACC
GTTAAGGCTGCTGGTGAGCTTAAGGAGCGTTTAGAAAAGAAAATCACCGAGCAATTGCGTTTGACAAATGACACTGCCCT
CAAACAATTTCTCAGCGAACAACTCTTGGGATTGCAGACTGCGGATATTGGAACCATGGATGCCTTTACCCAAAAATTAG
TGACACAGTACGGCTATACCTTGGGAATTTCACCAAATTTTCGAATTTTACAAGATAAAAGCGAGCAGGATCTTCTTAAA
AATGATGTCTTTGACGACCTTTTTACTGATTACAGAACTGGCGATCAAGCAGAGCTTTTCACTAAGCTTGTTAGGAATTT
TGCTGGAAATCGAAAAGATTCGAGCAATTTTAGACAAATCATTTACAAAATTTATGATTTCAGTCAGGCAACCGATAATC
CCCAAAGATGGCTTTTGGAGAATTTCTTAAAAGGAGCCAATACCTATAAGGATTTTTCAGCTATTCCTGAACAAGAAGTG
AAAGACTTTTTGAATACTTTGCAGGAAACTGCTCTCGCTCTTCGTGATGTGACGGATTTAGAAGATTACAAGCAAGTAAC
GGCTAAAGGAACTCCAACAGCAGCTTATCAAAGGCACCTTAAAATGATTGAGCAGCTGCAGGATTGGGTCTTGCATTTTG
ACAATCTATATGGGCGAGATGGTCTGGGGAAATTAGCAAATGACATTGCAACACTCATTCCATCTGGTAACGATGTGACA
GTAGCAGGTGTTAAATATCCTGTCTTTCGCAGTTTGCACAGTCGCTTAAGAGGACTAAAACACTTGGAAACAATTTTCAA
GTACCAGGATCAAAGTCTGCCTTTGTTGCAAGTACTGCAATCTTTTGCCCTTGATTTTTCAAAACAATACCTGCAAGCAA
AGATGCAGGAAAATGCCTTTGAGTTTTCAGACATTGCACATTTTGCTATCCAGATTTTAGAAGAAAATGATGCTATTCGT
CAGCTTTATATAGATAAGTATCACGAAGTCATGGTGGATGAATATCAGGATAATAATCACACCCAAGAGCGCATGTTGGA
ACTTTTATCTAATGGGCGCAATCGCTTCATGGTAGGAGATATTAAGCAGTCTATCTATCGGTTTCGTCAGGCAGATCCAC
AGATTTTTAATCAAAAATTTAAGGATTTTCAAGAACATCCAGAGCATGGAAAACTCATTCTCTTAAAAGAGAACTTTCGG
AGTCAGTCAGAAGTCTTAGATGCTACCAATAGTGTTTTTACGCACCTTATGGATGAAACGGTTGGAGAAATTCTCTACGA
TGATACCCATCAGCTTGTGGCTGGCAGTTCAGCTCAGAAAATTCCTTATCCGCAAAATGAAACACAAGTCCTCATCTATG
ATACAAAGGATCAGCAAAATCAAGATCTTGCTGTAGAAGATGATAGTAATCAAATCAGTCTAGGTGAGGTCAAATTGGTT
GCTAAGGAGATTATTCGTCTTCATAATGAAGAAAAGGTTCAGTTTGAAGATATTACCTTGCTTGTCTCATCGCGGACACG
CAATGATGGTATCTTGCAAACATTTGATGATTATGGCATTCCTTTGGTGACTGATGGTGGTGAACAAAACTATCTGAAAT
CAGTGGAAGTTATGGTCATGTTGGATACTCTGCGTTCTATTGATAATCCTCTCAATGATTATGCTCTAGTAGCTCTTTTG
CGTTCACCTATGTTTGCTTTTGATGAGGATGACTTGGCTCGTCTAGCTCTGCAAAATCTACCAGATCAACACAAACAAAA
TCTTTATGAAAAGATGGAGAATGCCAGAAATGGCCAAGGCCAGCAAGTTCAGTTGATCACGGAAGCATTGTCTGCCAAAT
TGGATGCTTTCTTTGAAACTTTCCTCAGTTGGCGTAAGTTTAGTCTCTTAAATTCGCTCTATGATTTGATTTGGAAAATT
TATAATGATAAGTTTTACTATGATTATGTGGGAAGTTTACCAAAATCTGAACAGCGCCAAGCCAATCTTTATGCTCTAGC
CCTGCGTGCCGATAACTTTGAGAAAACAGGTTTTAAGGGGTTGTCGCGCTTCATTCGCATGATTGACAAAATTCTAGAAA
ATCAAAATGACTTGGCCGATGTTGAAGTCGCTTTACCTAAAAATGCAGTGACGCTGATGACGATTCATAAGAGTAAGGGA
TTGGAATTTAAATATGTCTTTATTCTTAATATTGATAAAAAATTTAGCATTCAAGATATGACATCACCCTTAATCTTATC
GCGGCAAAACGGTGTTGGTATCAAGTATATTGCTGATATGAAAGAAGAACTAGAGGAAAAATTATTGCCGATAGTTAAAG
TCAGCATGGATACTCTTCCTTATCAACTGAATAAGCGTGAGCTTCGTCTGGCAACCCTATCTGAACAAATGCGATTGCTT
TATGTTGCCATGACACGATCTGAAAAGAAACTTTACTTGGTCGGAAAAGGCAGTCAGGAAAAATTAGGGGATCAGTATGA
TGGCAAATCAGAAAACAATCATTTGCCAGTAGCTGATCGTGAACACTATTTGACTTTTCAGGATTGGCTTTTGGCGATTG
AAGCTGCTTATGCTGCCGATGAACTTCATTTTAAAACAAGTTTTATAACGGATGAAGACTTAACAGAAGATAAAATGGGA
AGTTTAGAAGCAGAGCAGGCTTATGATGCGGATAATCTTAAGGATAATCGGCAATCAGATGATATTGCGCGTGCTTTAGA
TATGTTAGAAGCAGTTGAAAAATTAAATCAGCACTATAAGGCTGCTATCCATTTACCAACTGTTCGTACGCCAAGTCAGA
TCAAAAAATTTTATGAGCCTGTTATGGAAACAGAAGGTGTAGAGGTGATGCAAACTTCCTATCAGACTAAACCAAAGTTT
GAGCTGCCTCAATTTTCAAAAAAGGCAGGACAAGATCCAACAGCTCTTGGTTCAAGTGTTCATGAACTTATGCAGCGGCT
TCATTTGAGTGAACAGGTTAGTCTTGAAGATATTTTAACTGCTCTGGCAGAACTATCTGTAGAAGAAAATGTTAAAAAAG
CTATTCAGGTTGATAAGATTTTGCATTTCTTCCAGACCAGCCAACTGGGGAAACTCATTCAAGCAAATGCTGACAAGGTC
TATCGTGAAGCACCCTTTGCTATGCTGCAAGCGGATCCTGCAAGCGGAGAAGACTATGTCGTGCGGGGGATTATTGACGG
TTACATTCTTTTTGATAATCGGATTGTCCTCTTTGATTATAAAACAGATAAATTCACTAATAGTCAAGCTATTAAAGAGC
GTTATCAAGGTCAGATGACACTTTATGCTCAAGCTTTGAGCCAATCCTATAATATCCAACAAGTAGACAGTTATTTAATT
CTATTAGGCGGTGAAAAATTAGAAGTTGTGGAAATTTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-893)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1041-1191)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.524

100

0.532

Multiple sequence alignment