Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FIU13_RS01890 Genome accession   NZ_CP040997
Coordinates   360761..361357 (-) Length   198 a.a.
NCBI ID   WP_029714296.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 355761..366357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU13_RS01875 (FIU13_01875) - 357257..357952 (-) 696 WP_029714299.1 TIGR02206 family membrane protein -
  FIU13_RS01880 (FIU13_01880) murF 358032..359423 (-) 1392 WP_010922441.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FIU13_RS01885 (FIU13_01885) - 359614..360660 (-) 1047 WP_002989146.1 D-alanine--D-alanine ligase -
  FIU13_RS01890 (FIU13_01890) recR 360761..361357 (-) 597 WP_029714296.1 recombination mediator RecR Machinery gene
  FIU13_RS10415 (FIU13_01895) - 361404..361595 (-) 192 WP_011285608.1 hypothetical protein -
  FIU13_RS01900 (FIU13_01900) - 362156..362935 (-) 780 WP_002989141.1 formate/nitrite transporter family protein -
  FIU13_RS01905 (FIU13_01905) - 363059..363601 (-) 543 WP_002989140.1 hypothetical protein -
  FIU13_RS01910 (FIU13_01910) - 363762..364283 (-) 522 WP_002983930.1 transcription repressor NadR -
  FIU13_RS01915 (FIU13_01915) - 364390..365085 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  FIU13_RS01920 (FIU13_01920) - 365324..366259 (+) 936 WP_010922443.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21618.75 Da        Isoelectric Point: 4.8853

>NTDB_id=323877 FIU13_RS01890 WP_029714296.1 360761..361357(-) (recR) [Streptococcus pyogenes strain FDAARGOS_774]
MLYATPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=323877 FIU13_RS01890 WP_029714296.1 360761..361357(-) (recR) [Streptococcus pyogenes strain FDAARGOS_774]
GTGCTTTATGCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGTCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495