Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CNQ82_RS09915 Genome accession   NZ_CP033460
Coordinates   2065144..2065581 (-) Length   145 a.a.
NCBI ID   WP_123145124.1    Uniprot ID   -
Organism   Staphylococcus debuckii strain SDB 2975     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2060144..2070581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ82_RS09895 (CNQ82_09895) tenA 2060943..2061629 (-) 687 WP_123145120.1 thiaminase II -
  CNQ82_RS09900 (CNQ82_09900) - 2061907..2062605 (-) 699 WP_123145121.1 transglycosylase family protein -
  CNQ82_RS09905 (CNQ82_09905) - 2062827..2063525 (-) 699 WP_123145122.1 transglycosylase -
  CNQ82_RS09910 (CNQ82_09910) - 2063737..2064507 (-) 771 WP_123145123.1 transglycosylase family protein -
  CNQ82_RS09915 (CNQ82_09915) ssb 2065144..2065581 (-) 438 WP_123145124.1 single-stranded DNA-binding protein Machinery gene
  CNQ82_RS09920 (CNQ82_09920) - 2065771..2066214 (+) 444 WP_095104284.1 YwpF family protein -
  CNQ82_RS09925 (CNQ82_09925) fabZ 2066266..2066703 (-) 438 WP_123145125.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CNQ82_RS09930 (CNQ82_09930) - 2066707..2066895 (-) 189 WP_123145126.1 DNA-directed RNA polymerase subunit beta -
  CNQ82_RS09935 (CNQ82_09935) murA 2066906..2068177 (-) 1272 WP_123145127.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CNQ82_RS09940 (CNQ82_09940) - 2068291..2068524 (-) 234 WP_095104274.1 DUF1146 family protein -
  CNQ82_RS09945 (CNQ82_09945) - 2068707..2069111 (-) 405 WP_095104272.1 F0F1 ATP synthase subunit epsilon -
  CNQ82_RS09950 (CNQ82_09950) atpD 2069132..2070547 (-) 1416 WP_123145128.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16324.12 Da        Isoelectric Point: 8.7674

>NTDB_id=323867 CNQ82_RS09915 WP_123145124.1 2065144..2065581(-) (ssb) [Staphylococcus debuckii strain SDB 2975]
MLNKIVIVGRLTRNPQLAQKEDSDIASFSVATERNYSYQGQNQQAVDYIFCKAFGKTAKNIAQYTKKGSLVGITGHMRSY
KYEKDKQTHFITELIVETIKFISSPNSNENSTSNYSNITENLEGSPAFQENQLSTATQNPQTQNQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=323867 CNQ82_RS09915 WP_123145124.1 2065144..2065581(-) (ssb) [Staphylococcus debuckii strain SDB 2975]
TTGTTAAACAAAATCGTCATTGTTGGACGTCTAACCAGAAATCCTCAACTAGCACAAAAGGAGGATAGTGATATTGCCAG
TTTTAGTGTAGCAACTGAAAGAAATTACAGCTATCAAGGTCAGAATCAACAAGCAGTTGATTATATCTTTTGTAAAGCTT
TCGGTAAAACAGCAAAAAATATAGCTCAATACACTAAAAAAGGATCGCTAGTAGGAATAACTGGACACATGCGTTCATAT
AAGTATGAAAAAGATAAGCAAACTCATTTTATAACTGAACTTATAGTTGAAACTATTAAGTTCATATCGAGTCCAAATTC
TAATGAAAATTCCACTTCAAATTACTCAAATATAACTGAAAACCTAGAAGGAAGCCCTGCCTTTCAAGAAAATCAGTTAT
CCACTGCCACTCAAAATCCTCAGACACAAAACCAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

61.739

79.31

0.49
  ssb Staphylococcus aureus MW2

60.87

79.31

0.483

Multiple sequence alignment