Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CNQ82_RS09265 Genome accession   NZ_CP033460
Coordinates   1933763..1934392 (-) Length   209 a.a.
NCBI ID   WP_095104520.1    Uniprot ID   -
Organism   Staphylococcus debuckii strain SDB 2975     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928763..1939392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ82_RS09235 (CNQ82_09235) - 1929187..1930425 (-) 1239 WP_123145018.1 aminopeptidase -
  CNQ82_RS09240 (CNQ82_09240) - 1930464..1930670 (-) 207 WP_095104530.1 DUF1128 family protein -
  CNQ82_RS09245 (CNQ82_09245) - 1930906..1931370 (+) 465 WP_123145019.1 low molecular weight protein-tyrosine-phosphatase -
  CNQ82_RS09250 (CNQ82_09250) - 1931378..1931668 (+) 291 WP_123145020.1 YtxH domain-containing protein -
  CNQ82_RS09255 (CNQ82_09255) - 1931787..1932863 (+) 1077 WP_123145021.1 YihY/virulence factor BrkB family protein -
  CNQ82_RS09260 (CNQ82_09260) - 1933123..1933701 (+) 579 WP_123145022.1 beta-class carbonic anhydrase -
  CNQ82_RS09265 (CNQ82_09265) vraR 1933763..1934392 (-) 630 WP_095104520.1 response regulator transcription factor Regulator
  CNQ82_RS09270 (CNQ82_09270) vraS 1934382..1935425 (-) 1044 WP_123145023.1 sensor histidine kinase Regulator
  CNQ82_RS09275 (CNQ82_09275) liaF 1935422..1936123 (-) 702 WP_123145024.1 cell wall-active antibiotics response protein LiaF -
  CNQ82_RS09280 (CNQ82_09280) - 1936139..1936534 (-) 396 WP_123145025.1 hypothetical protein -
  CNQ82_RS09285 (CNQ82_09285) map 1936668..1937435 (-) 768 WP_123145026.1 type I methionyl aminopeptidase -
  CNQ82_RS09290 (CNQ82_09290) - 1937690..1938676 (+) 987 WP_123145027.1 FUSC family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23740.30 Da        Isoelectric Point: 4.7092

>NTDB_id=323864 CNQ82_RS09265 WP_095104520.1 1933763..1934392(-) (vraR) [Staphylococcus debuckii strain SDB 2975]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELQPDLILMDLLMEDMDGVEATQQIKKDLPKIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=323864 CNQ82_RS09265 WP_095104520.1 1933763..1934392(-) (vraR) [Staphylococcus debuckii strain SDB 2975]
ATGACGATTAAAGTGCTGTTTGTGGATGATCATGAAATGGTTCGTATCGGCATTTCAAGTTATCTGTCAACACAACCTGA
TATTGAAGTAGTAGGGGAAGGTAAATCTGGAAAGGAAGCGATTGAAAAAGCACATGAACTGCAACCGGATTTAATTTTGA
TGGATTTGTTGATGGAGGATATGGATGGCGTAGAAGCTACGCAACAAATAAAGAAAGATTTGCCTAAGATTAAAGTGTTA
ATGTTAACAAGTTATATAGAAGATAATGAAGTATATCGTGCCTTAGATGCAGGCGTAGACAGCTATATACTTAAAACTAC
GAGTGCGAGCGACATTGCAGAAGCAATTAGAAAGACGCAACATAATGAATCTGTATTTGAAGCGGAAGTGCTGGTTAAAA
TGCGCAACCGCATGAATCAACGTGCTGAGTTATATGAAATGCTTACAGAACGTGAAATGGAAATTTTATTATTGATTGCT
AAAGGTTATTCCAATCAAGAAATTGCCAGTGCATCGCATATTACAATTAAGACAGTTAAAACTCACGTGAGCAATATTTT
AAGCAAGTTGGAAGTGCAAGATAGAACACAAGCAGTTATTTATGCTTTCCAACATGATTTAATCCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

91.388

100

0.914
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment