Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EC605_RS04270 Genome accession   NZ_CP033426
Coordinates   852389..852907 (-) Length   172 a.a.
NCBI ID   WP_005721894.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain CO3MRSI1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 847389..857907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC605_RS04250 dnaB 848062..849453 (-) 1392 WP_005721050.1 replicative DNA helicase -
  EC605_RS04255 rplI 849473..849928 (-) 456 WP_005721048.1 50S ribosomal protein L9 -
  EC605_RS04260 - 849940..851961 (-) 2022 WP_005721046.1 DHH family phosphoesterase -
  EC605_RS04265 rpsR 852125..852361 (-) 237 WP_003549366.1 30S ribosomal protein S18 -
  EC605_RS04270 ssb 852389..852907 (-) 519 WP_005721894.1 single-stranded DNA-binding protein Machinery gene
  EC605_RS04275 rpsF 852957..853253 (-) 297 WP_005723612.1 30S ribosomal protein S6 -
  EC605_RS04280 gyrA 853470..855950 (-) 2481 WP_005721040.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18679.21 Da        Isoelectric Point: 4.7317

>NTDB_id=323678 EC605_RS04270 WP_005721894.1 852389..852907(-) (ssb) [Lactobacillus crispatus strain CO3MRSI1]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=323678 EC605_RS04270 WP_005721894.1 852389..852907(-) (ssb) [Lactobacillus crispatus strain CO3MRSI1]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTAGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.143

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.705

100

0.529

Multiple sequence alignment