Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FHI56_RS09340 Genome accession   NZ_CP040804
Coordinates   1789365..1790009 (-) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784365..1795009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS09315 (FHI56_09315) - 1786443..1787441 (-) 999 WP_149561431.1 NAD(P)/FAD-dependent oxidoreductase -
  FHI56_RS09320 (FHI56_09320) trmD 1787443..1788162 (-) 720 WP_002886864.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FHI56_RS09325 (FHI56_09325) rimM 1788152..1788670 (-) 519 WP_002884411.1 ribosome maturation factor RimM -
  FHI56_RS09340 (FHI56_09340) vraR 1789365..1790009 (-) 645 WP_002884791.1 response regulator transcription factor Regulator
  FHI56_RS09345 (FHI56_09345) - 1789999..1791009 (-) 1011 WP_045768527.1 sensor histidine kinase -
  FHI56_RS09350 (FHI56_09350) liaF 1791006..1791704 (-) 699 WP_138261666.1 cell wall-active antibiotics response protein LiaF -
  FHI56_RS09355 (FHI56_09355) - 1791867..1792625 (-) 759 WP_045768526.1 potassium channel family protein -
  FHI56_RS09360 (FHI56_09360) stkP/pknB 1792770..1794650 (-) 1881 WP_045768525.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=323595 FHI56_RS09340 WP_002884791.1 1789365..1790009(-) (vraR) [Streptococcus salivarius strain LAB813]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=323595 FHI56_RS09340 WP_002884791.1 1789365..1790009(-) (vraR) [Streptococcus salivarius strain LAB813]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTAGTTGGGGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TCGTTATGGACCTTGTTATGCCTGAATTGGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGACA
ATAAGATTAAATACCATGATAGCCATCCGGACCTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAGGGGTATGACAATCAAACTATTGCTAATGAGCTATTTATTTCATTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCAGTCGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379

Multiple sequence alignment