Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D5285_RS13445 Genome accession   NZ_CP033389
Coordinates   2672108..2673838 (-) Length   576 a.a.
NCBI ID   WP_020452128.1    Uniprot ID   A0AAW6KD18
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2667108..2678838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS13415 (D5285_13415) - 2667412..2667717 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  D5285_RS23010 - 2668217..2668786 (-) 570 WP_020452125.1 serine O-acetyltransferase -
  D5285_RS13430 (D5285_13430) - 2668916..2669212 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  D5285_RS13435 (D5285_13435) spo0A 2669553..2670353 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  D5285_RS13440 (D5285_13440) spoIVB 2670643..2671893 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  D5285_RS13445 (D5285_13445) recN 2672108..2673838 (-) 1731 WP_020452128.1 DNA repair protein RecN Machinery gene
  D5285_RS13450 (D5285_13450) ahrC 2673870..2674319 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  D5285_RS13455 (D5285_13455) - 2674483..2675328 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  D5285_RS13460 (D5285_13460) dxs 2675325..2677226 (-) 1902 WP_041817249.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D5285_RS13465 (D5285_13465) - 2677459..2678349 (-) 891 WP_020452132.1 polyprenyl synthetase family protein -
  D5285_RS13470 (D5285_13470) - 2678339..2678599 (-) 261 WP_020452133.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64604.45 Da        Isoelectric Point: 4.8363

>NTDB_id=323567 D5285_RS13445 WP_020452128.1 2672108..2673838(-) (recN) [Bacillus paralicheniformis strain CBMAI 1303]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMRKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLTKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=323567 D5285_RS13445 WP_020452128.1 2672108..2673838(-) (recN) [Bacillus paralicheniformis strain CBMAI 1303]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTCGGGATTGAAGCCTCGGATGACATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAGAAAGGTGAAAGAGCTTTCTGAAAGCGAACAGGAAATGGC
TCACAGACTCGATTTAATACAGTTTCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTCGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCATT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCATCTTTTGATTACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CGCCGTTGACAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTCGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.424

100

0.814

Multiple sequence alignment