Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FHI56_RS05245 Genome accession   NZ_CP040804
Coordinates   825343..825939 (+) Length   198 a.a.
NCBI ID   WP_002889030.1    Uniprot ID   J7THI3
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820343..830939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS05225 (FHI56_05225) - 820343..821119 (+) 777 WP_004182939.1 alpha/beta fold hydrolase -
  FHI56_RS05230 (FHI56_05230) - 821270..822124 (+) 855 WP_004182938.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  FHI56_RS05235 (FHI56_05235) - 822128..822964 (+) 837 WP_004182937.1 NAD(P)H-hydrate dehydratase -
  FHI56_RS05240 (FHI56_05240) pbp2b 823087..825201 (+) 2115 WP_004182936.1 penicillin-binding protein PBP2B -
  FHI56_RS05245 (FHI56_05245) recR 825343..825939 (+) 597 WP_002889030.1 recombination mediator RecR Machinery gene
  FHI56_RS05250 (FHI56_05250) licT 826043..826882 (+) 840 WP_004182935.1 BglG family transcription antiterminator LicT -
  FHI56_RS05255 (FHI56_05255) ybeY 827099..827596 (+) 498 WP_002886021.1 rRNA maturation RNase YbeY -
  FHI56_RS05260 (FHI56_05260) - 827577..827981 (+) 405 WP_004182934.1 diacylglycerol kinase family protein -
  FHI56_RS05265 (FHI56_05265) era 828004..828903 (+) 900 WP_002886016.1 GTPase Era -
  FHI56_RS05270 (FHI56_05270) mutM 828948..829769 (+) 822 WP_004182932.1 DNA-formamidopyrimidine glycosylase -
  FHI56_RS05275 (FHI56_05275) coaE 829766..830359 (+) 594 WP_037605601.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21768.93 Da        Isoelectric Point: 4.5326

>NTDB_id=323567 FHI56_RS05245 WP_002889030.1 825343..825939(+) (recR) [Streptococcus salivarius strain LAB813]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCNICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=323567 FHI56_RS05245 WP_002889030.1 825343..825939(+) (recR) [Streptococcus salivarius strain LAB813]
ATGCTTTATCCTACTCCAATTGCGAAGCTGATTGATAGCTTTTCAAAACTCCCTGGAATTGGGGCTAAAACAGCGACACG
CCTAGCTTTTTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTCGCAAAAAACCTCTTGGCAGCAAAACGTGAAT
TGACTTATTGTTCGGTCTGTGGTCGTTTGACAGATGATGATCCATGTAACATTTGTACCGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAAGACTCCAAAGATGTTTCAGCTATGGAAAAGATTCAGGAATACCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATTTCCCCTATGAATGGTGTTGGGCCTGACGATATTAACCTGAAAAGTTTGATTACCCGTCTTATGGACA
GCGAGGTTGACGAGGTTATCATCGCCACTAATGCAACAGCAGATGGTGAGGCAACCTCTATGTATATTTCTCGTGTCCTT
AAACCTGCAGGAATCAAGGTGACTCGTTTAGCGCGTGGTTTGGCCGTCGGTTCTGACATTGAGTATGCTGATGAAGTGAC
TTTGCTAAGAGCTATCGAAAATCGAACAGAATTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7THI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment