Detailed information NTG0323526

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FHI56_RS01955
• Genome accession: NZ_CP040804
• Coordinates: 179397..180497 (-)
• Length: 366 a.a.
• NCBI ID: WP_013991340.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LAB813
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 174397..185497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FHI56_RS01940 (FHI56_01940)	-	175232..176104 (-)	873	WP_014632477.1	YitT family protein	-
FHI56_RS01945 (FHI56_01945)	trpS	176533..177555 (+)	1023	WP_084871082.1	tryptophan--tRNA ligase	-
FHI56_RS01950 (FHI56_01950)	guaB	177734..179215 (+)	1482	WP_013991341.1	IMP dehydrogenase	-
FHI56_RS01955 (FHI56_01955)	recF	179397..180497 (-)	1101	WP_013991340.1	DNA replication/repair protein RecF	Machinery gene
FHI56_RS01960 (FHI56_01960)	yaaA	180500..180877 (-)	378	WP_013991339.1	S4 domain-containing protein YaaA	-
FHI56_RS01965 (FHI56_01965)	yfmF	180955..182205 (+)	1251	WP_013991338.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
FHI56_RS01970 (FHI56_01970)	yfmH	182207..183484 (+)	1278	WP_014632479.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
FHI56_RS01975 (FHI56_01975)	-	183543..184400 (+)	858	WP_013991336.1	helix-turn-helix transcriptional regulator	-
FHI56_RS01980 (FHI56_01980)	pgsA	184413..184955 (+)	543	WP_002885640.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42233.26 Da
• Isoelectric Point: 7.7930

>NTDB_id=323526 FHI56_RS01955 WP_013991340.1 179397..180497(-) (recF) [Streptococcus salivarius strain LAB813]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGDIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=323526 FHI56_RS01955 WP_013991340.1 179397..180497(-) (recF) [Streptococcus salivarius strain LAB813]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCTTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCGCATAGGGATGATTTAACATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGTCTCATACTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAATCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTGATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.084	97.814	0.637
recF	Bacillus subtilis subsp. subtilis str. 168	44.142	100	0.443