Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SMI_RS10455 Genome accession   NC_013853
Coordinates   2129431..2130528 (+) Length   365 a.a.
NCBI ID   WP_000266700.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2124431..2135528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS10430 (smi_2069) pgsA 2124946..2125491 (-) 546 WP_000712121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SMI_RS10435 (smi_2070) rodZ 2125502..2126329 (-) 828 WP_001227988.1 cytoskeleton protein RodZ -
  SMI_RS10440 (smi_2071) yfmH 2126371..2127654 (-) 1284 WP_000170200.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SMI_RS10445 (smi_2072) yfmF 2127651..2128901 (-) 1251 WP_000424258.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SMI_RS10450 (smi_2073) yaaA 2129060..2129428 (+) 369 WP_000455905.1 S4 domain-containing protein YaaA -
  SMI_RS10455 (smi_2074) recF 2129431..2130528 (+) 1098 WP_000266700.1 DNA replication/repair protein RecF Machinery gene
  SMI_RS10460 (smi_2075) guaB 2130579..2132057 (-) 1479 WP_000073412.1 IMP dehydrogenase -
  SMI_RS10465 (smi_2076) trpS 2132208..2133233 (-) 1026 WP_000165472.1 tryptophan--tRNA ligase -
  SMI_RS10470 (smi_2077) - 2133439..2135061 (+) 1623 WP_000958776.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42091.20 Da        Isoelectric Point: 8.0002

>NTDB_id=32348 SMI_RS10455 WP_000266700.1 2129431..2130528(+) (recF) [Streptococcus mitis B6]
MWLQNLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLEYFGCKKHFELSNQIEELSISYQSSVNITDNQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYLNGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISHSIQTFITTTSLDHLQNLPENLSIFTIQDGKVFVNYN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=32348 SMI_RS10455 WP_000266700.1 2129431..2130528(+) (recF) [Streptococcus mitis B6]
ATGTGGCTACAAAACCTATCTCTCAAGACTTTTCGTAACTACAAAGAGACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTAGGACGCAATGCACAAGGTAAAACAAATATGTTAGAGGCTATCTATTTTTTAGCCTTAACACGCAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAGCTTCATCTTTCAGGTCTTGTTCAGAAAAAAACTGGATCC
ATTCCTCTCGAAATCGAACTAACACAAAAAGGGCGTGTGACAAAAGTTAATCATTTAAAACAGGCACGACTTTCAGATTA
TGTCGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGGTTCGACGAAAAT
TCATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCAGATTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACCTTCCTTTCAGTCTTAGATGATCAGCTAGTCGATTATGGATG
TCGTGTGATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATATTTTGGGTGTAAGAAACATTTTGAACTCTCTAATC
AGATTGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAATCAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TCTAAACGGGATGGATGCTAGTTTCGGAAGTCAAGGCCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AGTTAATGGAAAGCATTACTACAGAATCTCCAATATTACTGCTTGACGATGTTATGAGCGAACTTGACAACACTAGACAA
CTAAAATTATTAGAAACGATTTCTCATTCAATCCAAACCTTTATCACAACAACAAGCTTAGATCATCTTCAAAATCTACC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGTTTTTGTAAATTACAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

97.26

100

0.973
  recF Bacillus subtilis subsp. subtilis str. 168

46.196

100

0.466

Multiple sequence alignment