Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   FDP16_RS11690 Genome accession   NZ_CP040798
Coordinates   2337906..2339240 (-) Length   444 a.a.
NCBI ID   WP_176799744.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2332906..2344240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS11670 (FDP16_12145) - 2334244..2336829 (+) 2586 WP_176799743.1 YfhO family protein -
  FDP16_RS11685 (FDP16_12160) comE 2337136..2337900 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  FDP16_RS11690 (FDP16_12165) comD/comD1 2337906..2339240 (-) 1335 WP_176799744.1 competence system sensor histidine kinase ComD Regulator
  FDP16_RS11695 (FDP16_12170) - 2339268..2339375 (-) 108 WP_176799745.1 competence protein -
  FDP16_RS11705 (FDP16_12180) rlmH 2339672..2340151 (-) 480 WP_002928597.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FDP16_RS11710 (FDP16_12185) htrA 2340355..2341527 (+) 1173 WP_176799746.1 S1C family serine protease Regulator
  FDP16_RS11715 (FDP16_12190) spo0J 2341591..2342352 (+) 762 WP_176799747.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 51932.62 Da        Isoelectric Point: 6.4202

>NTDB_id=323362 FDP16_RS11690 WP_176799744.1 2337906..2339240(-) (comD/comD1) [Streptococcus sanguinis strain CGMH058]
MSLEIIGLIVHPFINVAAFLVILSKITKIKHTRFFVAVCFGLEIIIPFIIAFLGHVFSFEISFPSYTLSFFLPLFIVWYF
CRVEKIKKYQSFLLSFFLCLSIDSSTTFFSVIISSVLGDDFVAQYMGLFLTCINLISLFFMVKVIDIFDFRIDYLKRSFF
KSQILMISSLYAMNWLILNLSHWISNIKHFNSFSSMIATICFLAFLSTLVTFKDSREKYEKEERLRQKESEQLRLQEYTD
EIVRLYYEIKGFRHDYASMLTSMQVAIQTGDIKEIEHIYQEVLADANLNLRSDKYTVFDLNNVGDSALRSVMTETIFQAR
EHQIQLTFEVKDKVERLPIKLLDLVRIASILLNNAIESAIDSLEKIVHVSLVQLDDRTIFVVQNSRKEGKLDLEELYQPE
FSTKGENRGYGLNNIKEILDRYEFITLDTQIEPRNFTQILTIRR

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=323362 FDP16_RS11690 WP_176799744.1 2337906..2339240(-) (comD/comD1) [Streptococcus sanguinis strain CGMH058]
ATGTCACTTGAAATAATCGGATTAATTGTTCATCCTTTTATTAATGTAGCTGCATTTTTGGTGATTTTATCAAAAATCAC
TAAAATTAAGCATACTCGCTTTTTTGTAGCTGTTTGCTTTGGTCTTGAGATTATAATTCCGTTTATAATTGCTTTTTTAG
GGCATGTGTTTTCATTTGAAATCTCATTTCCATCTTATACGCTGTCATTTTTTCTCCCTCTATTTATAGTTTGGTATTTT
TGTAGAGTTGAAAAAATTAAAAAATATCAATCTTTCTTACTTTCCTTCTTTTTATGTTTGTCAATTGATAGCTCTACTAC
TTTCTTTTCAGTTATTATTTCATCTGTTTTAGGAGATGATTTTGTAGCTCAGTACATGGGTTTGTTTCTGACATGTATCA
ACTTAATATCCTTGTTCTTTATGGTAAAGGTTATTGATATTTTTGATTTCAGAATAGATTATCTTAAAAGAAGTTTCTTT
AAATCTCAGATTCTGATGATTAGTAGTTTATATGCAATGAATTGGCTGATTTTAAATCTCTCTCACTGGATTAGTAATAT
AAAGCATTTCAACAGTTTTAGCAGTATGATTGCTACTATTTGTTTCTTGGCCTTTCTTTCTACCTTGGTGACATTCAAGG
ACAGCCGTGAGAAATACGAGAAAGAAGAGCGTTTGCGTCAAAAAGAATCTGAACAGCTTCGACTTCAAGAATATACTGAT
GAAATTGTGAGATTGTACTATGAAATCAAAGGATTTCGTCATGATTATGCTAGCATGCTGACAAGTATGCAAGTAGCTAT
TCAAACTGGAGATATCAAGGAAATTGAGCATATTTATCAAGAGGTCTTGGCTGATGCAAATTTGAACCTGCGTTCAGATA
AATATACAGTTTTTGATTTGAATAATGTGGGAGATTCAGCTTTAAGGAGTGTCATGACTGAGACAATCTTTCAAGCGCGT
GAACATCAGATTCAGCTGACTTTTGAAGTTAAGGATAAAGTGGAACGCCTTCCAATCAAGTTGTTAGATCTGGTCAGAAT
TGCTAGTATTTTATTAAATAACGCTATTGAGAGTGCCATTGACAGCCTAGAAAAAATTGTCCATGTTTCTCTAGTTCAAC
TGGATGATAGAACCATTTTTGTTGTTCAAAATTCTCGTAAAGAAGGAAAATTGGATTTGGAAGAACTCTATCAGCCGGAA
TTTTCAACTAAAGGAGAAAATAGAGGCTATGGATTGAATAACATCAAGGAAATTTTAGATAGGTATGAATTTATCACTCT
TGATACACAAATTGAGCCAAGAAATTTTACACAGATTTTAACAATTAGGAGATAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(340-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus gordonii str. Challis substr. CH1

53.333

84.459

0.45
  comD/comD2 Streptococcus gordonii strain NCTC7865

51.979

85.36

0.444
  comD Streptococcus mitis NCTC 12261

42.013

100

0.432
  comD/comD1 Streptococcus pneumoniae R6

43.609

89.865

0.392
  comD/comD1 Streptococcus pneumoniae Rx1

43.609

89.865

0.392
  comD/comD1 Streptococcus pneumoniae D39

43.609

89.865

0.392
  comD/comD2 Streptococcus pneumoniae TIGR4

44.531

86.486

0.385
  comD Streptococcus mitis SK321

42.602

88.288

0.376