Detailed information NTG0323360

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FDP16_RS11650
• Genome accession: NZ_CP040798
• Coordinates: 2328268..2329362 (+)
• Length: 364 a.a.
• NCBI ID: WP_176799741.1
• Uniprot ID: -
• Organism: Streptococcus sanguinis strain CGMH058
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2323268..2334362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP16_RS11625 (FDP16_12100)	pgsA	2323694..2324233 (-)	540	WP_002899412.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
FDP16_RS11630 (FDP16_12105)	rodZ	2324250..2325104 (-)	855	WP_176799738.1	cytoskeleton protein RodZ	-
FDP16_RS11635 (FDP16_12110)	yfmH	2325138..2326433 (-)	1296	WP_176799739.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
FDP16_RS11640 (FDP16_12115)	yfmF	2326433..2327679 (-)	1247	Protein_2279	EF-P 5-aminopentanol modification-associated protein YfmF	-
FDP16_RS11645 (FDP16_12120)	yaaA	2327867..2328265 (+)	399	WP_176799740.1	S4 domain-containing protein YaaA	-
FDP16_RS11650 (FDP16_12125)	recF	2328268..2329362 (+)	1095	WP_176799741.1	DNA replication/repair protein RecF	Machinery gene
FDP16_RS11655 (FDP16_12130)	guaB	2329544..2331025 (-)	1482	WP_002910933.1	IMP dehydrogenase	-
FDP16_RS11660 (FDP16_12135)	trpS	2331230..2332255 (-)	1026	WP_176799742.1	tryptophan--tRNA ligase	-
FDP16_RS11665 (FDP16_12140)	-	2332546..2334168 (+)	1623	WP_002899531.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41885.14 Da
• Isoelectric Point: 8.0055

>NTDB_id=323360 FDP16_RS11650 WP_176799741.1 2328268..2329362(+) (recF) [Streptococcus sanguinis strain CGMH058]
MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIHFTENDLLVSGILEKKTGK
VPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVLFAPEDLQLIKGSPSLRRKFIDIELGQIKPIYLSDLSNYNHVLKQR
NAYLKANDKVDETFLTVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQIDSLEETYCS
SLLSSRKRDLFKKNTGVGPHRDDIAFFINQMDANFGSQGQHRSLVLSLKLAEIKLIESITKETPILLLDDVMSELDNNRQ
LKLLETISQDIQTFITTTTLEHLKNLPQDIKIFTIQQGQIISQS

Nucleotide

• Length: 1095 bp

>NTDB_id=323360 FDP16_RS11650 WP_176799741.1 2328268..2329362(+) (recF) [Streptococcus sanguinis strain CGMH058]
ATGTGGCTGCAATCATTAAAAATCAAGCATTTCCGAAATTATCAGGAAGCTGATATTGACTTCCATCCTGGCTTAAATGT
CTTTCTAGGCCAGAACGCACAAGGTAAAACCAATATTTTAGAAGCTGTTTATTTCTTAGCCTTGACAAGAAGCCACCGCA
CACGCTCAGATAAGGATTTGATTCATTTTACAGAAAATGATCTCCTTGTCTCTGGCATCTTAGAAAAAAAGACTGGTAAA
GTTCCCCTTGACATTAACTTGACACCAAAAGGTCGCATCACAAAAGTCAACCACTTGAAACAAAGTAAATTATCAGACTA
CATTGGAACCATGAATGTTGTCCTTTTTGCTCCTGAAGATTTACAGTTGATTAAAGGCTCCCCCAGTCTACGTCGTAAAT
TTATAGACATTGAACTCGGACAAATCAAGCCAATCTATCTATCAGATTTATCCAATTACAACCATGTCCTCAAACAACGC
AATGCCTATCTGAAAGCTAATGACAAAGTTGATGAAACCTTCTTGACTGTCCTTGATGAGCAGCTGGTTGACTATGGCTG
TCGTGTCATAAGGCATCGGTTGGATTTTTTGCAAAAATTAGAAAGCTTTGCTCAAGACAAGCACTGGGACATTTCTCAGA
ATCTAGAAAAATTGACTGTCAAGTATCTGTCATCTATTCCTTTACACCAAATTGACAGTTTAGAAGAAACTTACTGTTCT
TCCTTATTAAGCAGCCGTAAACGTGACCTATTCAAAAAAAATACAGGAGTTGGTCCCCATCGTGATGATATTGCTTTTTT
TATCAACCAGATGGATGCCAACTTTGGTAGTCAAGGTCAGCATCGCAGTCTTGTTTTATCACTGAAACTAGCCGAAATCA
AGTTAATAGAAAGCATTACGAAGGAAACACCTATTTTATTGCTTGACGATGTAATGAGCGAACTTGACAATAACCGTCAA
CTAAAATTATTAGAAACTATCTCTCAGGATATTCAAACTTTCATCACTACAACAACTTTAGAACATTTAAAAAATCTTCC
ACAAGATATTAAAATTTTCACCATTCAGCAAGGACAAATTATATCTCAATCCTAG

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	72.423	98.626	0.714
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442