Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   FDP16_RS10310 Genome accession   NZ_CP040798
Coordinates   2086720..2087112 (-) Length   130 a.a.
NCBI ID   WP_176799579.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2081720..2092112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS10290 (FDP16_10750) - 2082794..2083432 (-) 639 WP_176799576.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FDP16_RS10295 (FDP16_10755) - 2083550..2084299 (-) 750 WP_176799577.1 CPBP family intramembrane glutamic endopeptidase -
  FDP16_RS10300 (FDP16_10760) - 2084446..2085636 (-) 1191 WP_176799578.1 acetate kinase -
  FDP16_RS10305 (FDP16_10765) comGH 2085673..2086638 (-) 966 WP_124765830.1 class I SAM-dependent methyltransferase Machinery gene
  FDP16_RS10310 (FDP16_10770) comGG/cglG 2086720..2087112 (-) 393 WP_176799579.1 competence type IV pilus minor pilin ComGG Machinery gene
  FDP16_RS10315 (FDP16_10775) comGF/cglF 2087093..2087530 (-) 438 WP_176799580.1 competence type IV pilus minor pilin ComGF Machinery gene
  FDP16_RS10320 (FDP16_10780) comGE/cglE 2087514..2087807 (-) 294 WP_176799581.1 competence type IV pilus minor pilin ComGE Machinery gene
  FDP16_RS10325 (FDP16_10785) comGD 2087773..2088207 (-) 435 WP_176799582.1 competence type IV pilus minor pilin ComGD Machinery gene
  FDP16_RS10330 (FDP16_10790) comGC 2088167..2088484 (-) 318 WP_002896769.1 competence type IV pilus major pilin ComGC Machinery gene
  FDP16_RS10335 (FDP16_10795) comGB 2088484..2089518 (-) 1035 WP_256254487.1 competence type IV pilus assembly protein ComGB Machinery gene
  FDP16_RS10340 (FDP16_10800) comGA 2089448..2090389 (-) 942 WP_002896773.1 competence type IV pilus ATPase ComGA Machinery gene
  FDP16_RS10345 (FDP16_10805) - 2090519..2090899 (-) 381 WP_176799584.1 DUF1033 family protein -
  FDP16_RS10350 (FDP16_10810) - 2091038..2092099 (-) 1062 WP_176799585.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 130 a.a.        Molecular weight: 14617.60 Da        Isoelectric Point: 9.5370

>NTDB_id=323346 FDP16_RS10310 WP_176799579.1 2086720..2087112(-) (comGG/cglG) [Streptococcus sanguinis strain CGMH058]
MWKKKVEAGILLYALLMAAVFSLLLQFYLNRQVSSQRLQLFNGERTEAYAMAVLTKATAKDDSGEMEFEQGKASYRKQGK
NLEISSQLSSGHSYSFTFTISKKDEDKAKEDKKATDKKEKAISDEAGKSD

Nucleotide


Download         Length: 393 bp        

>NTDB_id=323346 FDP16_RS10310 WP_176799579.1 2086720..2087112(-) (comGG/cglG) [Streptococcus sanguinis strain CGMH058]
GTGTGGAAGAAGAAAGTTGAGGCTGGTATTTTACTGTATGCGCTGCTGATGGCCGCTGTCTTTAGCCTGCTCCTGCAGTT
TTATCTCAACCGTCAAGTCAGCAGTCAGCGTTTACAGCTTTTCAACGGGGAAAGGACAGAAGCCTATGCAATGGCAGTTC
TTACAAAAGCTACAGCCAAGGATGATAGCGGTGAGATGGAGTTTGAGCAGGGAAAGGCATCCTACCGAAAGCAAGGGAAG
AATCTGGAAATCAGCAGTCAGCTCAGCAGCGGTCATTCCTATTCCTTTACTTTTACCATTTCTAAGAAGGATGAGGATAA
AGCAAAGGAAGACAAGAAAGCAACTGACAAAAAGGAGAAAGCGATTTCGGACGAAGCTGGTAAGTCGGACTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae TIGR4

47.525

77.692

0.369

  comGG/cglG Streptococcus pneumoniae Rx1

47.525

77.692

0.369

  comGG/cglG Streptococcus pneumoniae D39

47.525

77.692

0.369

  comGG/cglG Streptococcus pneumoniae R6

47.525

77.692

0.369

  comGG/cglG Streptococcus mitis SK321

46.535

77.692

0.362

  comGG/cglG Streptococcus mitis NCTC 12261

47.475

76.154

0.362

  comGG Streptococcus mutans UA140

43.119

83.846

0.362

  comGG Streptococcus mutans UA159

43.119

83.846

0.362