Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   FDP16_RS09040 Genome accession   NZ_CP040798
Coordinates   1818484..1818942 (-) Length   152 a.a.
NCBI ID   WP_176799403.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813484..1823942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS09025 (FDP16_09420) tnpA 1814316..1814780 (-) 465 WP_176798194.1 IS200/IS605 family transposase -
  FDP16_RS09030 (FDP16_09425) rcrQ 1814978..1816735 (-) 1758 WP_176799401.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS09035 (FDP16_09430) rcrP 1816725..1818491 (-) 1767 WP_176799402.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS09040 (FDP16_09435) rcrR 1818484..1818942 (-) 459 WP_176799403.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FDP16_RS09045 (FDP16_09440) - 1819095..1819505 (-) 411 WP_176799404.1 peptide deformylase -
  FDP16_RS09050 (FDP16_09445) scrK 1819552..1820451 (-) 900 WP_002907200.1 fructokinase ScrK -
  FDP16_RS09055 (FDP16_09450) - 1820609..1822519 (-) 1911 WP_176799405.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17653.49 Da        Isoelectric Point: 8.4190

>NTDB_id=323336 FDP16_RS09040 WP_176799403.1 1818484..1818942(-) (rcrR) [Streptococcus sanguinis strain CGMH058]
MEKPLLEMKRFGRKIHLIVEKLAKEQGIESMAGPQGQVLHIVAYRMEEGKDTLIKDIEQELDISKSVASNLMKRMEKNGF
IQLETSKTDKRAKYIRLTPQSQERMKKIRDFFDEMDRSILNGVSEQELLIFSQVMAKFYQNIESLENGGKDV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=323336 FDP16_RS09040 WP_176799403.1 1818484..1818942(-) (rcrR) [Streptococcus sanguinis strain CGMH058]
ATGGAAAAGCCTTTATTAGAAATGAAGCGTTTTGGACGAAAGATTCATCTCATAGTGGAAAAACTTGCCAAGGAGCAAGG
GATTGAGTCCATGGCTGGGCCGCAGGGACAGGTCTTGCATATTGTCGCCTATCGTATGGAAGAGGGGAAGGACACTCTTA
TCAAGGATATTGAGCAGGAGTTGGATATTTCCAAATCGGTGGCCTCTAACTTAATGAAAAGGATGGAGAAGAATGGATTT
ATCCAGCTGGAAACGAGCAAGACAGACAAGCGGGCTAAATATATCCGTCTCACTCCGCAGTCGCAGGAAAGAATGAAAAA
AATCCGTGACTTTTTTGATGAAATGGATCGTTCTATTTTGAATGGTGTTTCTGAGCAGGAACTGCTGATTTTTTCTCAAG
TCATGGCCAAGTTTTATCAGAATATCGAAAGTTTAGAAAATGGAGGAAAAGATGTTTAA

Domains

Predicted by InterProScan.

Winged helix DNA-binding domain (HTH_27)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388