Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FDP16_RS09035 Genome accession   NZ_CP040798
Coordinates   1816725..1818491 (-) Length   588 a.a.
NCBI ID   WP_176799402.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811725..1823491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS09015 (FDP16_09405) - 1812205..1812846 (-) 642 WP_176799399.1 lantibiotic ABC transporter permease -
  FDP16_RS09020 (FDP16_09410) queG 1813036..1814217 (+) 1182 WP_176799400.1 tRNA epoxyqueuosine(34) reductase QueG -
  FDP16_RS09025 (FDP16_09420) tnpA 1814316..1814780 (-) 465 WP_176798194.1 IS200/IS605 family transposase -
  FDP16_RS09030 (FDP16_09425) rcrQ 1814978..1816735 (-) 1758 WP_176799401.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS09035 (FDP16_09430) rcrP 1816725..1818491 (-) 1767 WP_176799402.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS09040 (FDP16_09435) rcrR 1818484..1818942 (-) 459 WP_176799403.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FDP16_RS09045 (FDP16_09440) - 1819095..1819505 (-) 411 WP_176799404.1 peptide deformylase -
  FDP16_RS09050 (FDP16_09445) scrK 1819552..1820451 (-) 900 WP_002907200.1 fructokinase ScrK -
  FDP16_RS09055 (FDP16_09450) - 1820609..1822519 (-) 1911 WP_176799405.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65174.53 Da        Isoelectric Point: 5.0962

>NTDB_id=323335 FDP16_RS09035 WP_176799402.1 1816725..1818491(-) (rcrP) [Streptococcus sanguinis strain CGMH058]
MFKLFKRLTVREVSMIVLSVLFTFLTVYLELEVPTYISTITELLQTPGTGLADLWEPGLKMIGLSFASLLSAVVVGFFAA
RVAASFTQSLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQTLITMGLQVVTRGPIMAIWAMTKIIGKSESWLMA
VLIAVIVNILMTAVLMTLAFPKQSVAQRLVDKLNSVTRESLTGIRVVRAYNAEDYQDEKFAAANDEVTRLNLFIGRLMAM
INPVMMGISSGLTLAIYWIGAYLIQEAGLQERLPLFSDMVVFMSYAMQIVIGFLLMGALFIVLPRTIVSAGRINEVLDLH
SSITSPEQPKAAADSKGEVVFRDVSFRYSKNSEAVIEHVSFTAQAGDTVAFIGSTGSGKSTLVNLIPRFYDVTEGEILVD
GVNVQDYQLEDLHNKVGYIPQKAVLFSGDVESNLDFGQSKESPLDEQKMWEALDLAQAKPFVQEKEKGLKAEVAQSGTNF
SGGQRQRLAIARSLARKPEILIFDDSFSALDYKTDRILRKELAERTQDMTKLIVAQRISTIMDADQILVLDAGKVVGQGT
HRELLASNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=323335 FDP16_RS09035 WP_176799402.1 1816725..1818491(-) (rcrP) [Streptococcus sanguinis strain CGMH058]
ATGTTTAAGTTATTTAAACGGCTGACGGTAAGGGAAGTGAGCATGATTGTTCTCAGTGTGCTCTTCACCTTCCTAACAGT
ATATTTGGAATTAGAAGTTCCGACCTATATTTCGACGATTACAGAGCTATTGCAAACACCGGGGACTGGTTTGGCGGATT
TGTGGGAGCCGGGTCTGAAAATGATCGGCCTGTCTTTTGCTAGCTTGCTGTCAGCTGTTGTGGTTGGCTTTTTTGCCGCT
CGTGTAGCAGCCAGCTTTACCCAGAGTTTGCGGAGCGATATTTTCAACCGTGTGCTAGACTATTCGCAGACGGAGATTAA
GAAATTTTCAATCCCTAGTCTGCTGACTCGGACGACGAATGATATTACCCAGGTACAGACCTTAATTACCATGGGGCTGC
AGGTGGTGACCAGGGGACCGATTATGGCGATTTGGGCTATGACTAAGATTATCGGCAAGTCAGAAAGTTGGCTGATGGCG
GTTCTCATTGCTGTTATAGTCAATATCCTGATGACAGCAGTTTTGATGACCTTGGCCTTTCCCAAACAGTCAGTTGCGCA
GCGTTTGGTCGATAAACTAAACAGCGTCACTAGAGAGAGTCTGACTGGGATTCGCGTGGTCCGGGCTTACAATGCTGAGG
ATTATCAGGATGAGAAATTTGCGGCAGCCAATGATGAAGTAACCCGGCTCAATCTTTTTATCGGTCGTCTGATGGCTATG
ATAAATCCAGTTATGATGGGGATTTCCAGCGGTTTGACACTGGCTATTTACTGGATTGGTGCTTATTTGATTCAGGAAGC
TGGACTGCAGGAGCGTCTCCCGCTCTTCAGTGATATGGTCGTCTTTATGTCCTATGCTATGCAGATTGTGATTGGGTTCT
TGCTCATGGGGGCTCTCTTCATCGTCCTGCCTCGGACCATTGTATCCGCTGGCCGGATTAATGAAGTGCTGGACCTGCAT
TCTTCTATCACCAGTCCAGAACAGCCTAAGGCAGCAGCGGATAGCAAGGGAGAAGTGGTCTTTCGAGATGTGTCCTTCCG
CTATTCCAAGAATTCAGAAGCAGTCATTGAGCATGTTAGCTTTACAGCGCAGGCTGGTGATACCGTGGCCTTTATCGGTT
CAACCGGTTCAGGAAAATCCACGCTAGTCAATCTCATTCCTCGTTTCTATGATGTGACTGAAGGAGAGATTCTGGTAGAT
GGTGTCAATGTTCAGGATTACCAGCTGGAAGACTTGCATAATAAGGTCGGCTACATCCCTCAAAAGGCGGTGCTTTTCTC
TGGCGATGTTGAGAGCAATCTGGACTTCGGCCAAAGCAAAGAAAGCCCGCTGGATGAGCAGAAAATGTGGGAGGCTCTTG
ACCTAGCACAGGCTAAACCCTTTGTCCAAGAGAAGGAAAAGGGGCTGAAAGCAGAAGTGGCTCAAAGCGGGACCAACTTC
TCTGGTGGTCAGCGTCAGCGTTTGGCTATTGCCAGATCTTTGGCTCGTAAGCCAGAAATCCTCATCTTTGACGACTCCTT
CTCAGCGCTGGACTATAAGACAGACCGCATTTTGCGCAAGGAATTGGCTGAGCGGACGCAGGATATGACCAAACTAATCG
TGGCGCAGCGGATTTCTACTATCATGGATGCGGATCAAATCTTGGTCTTGGATGCTGGTAAGGTGGTTGGTCAAGGTACC
CACCGAGAGCTTTTGGCCAGCAACGAAGTCTATCAAGAAATTGCTTACTCACAACTATCCAAGGAGGAATTAGAAAATGG
AAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-290)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.333

100

0.697