Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FDP16_RS08265 Genome accession   NZ_CP040798
Coordinates   1665469..1666065 (-) Length   198 a.a.
NCBI ID   WP_176799288.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660469..1671065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS08245 (FDP16_08595) - 1661049..1661885 (-) 837 WP_176799284.1 toll/interleukin-1 receptor domain-containing protein -
  FDP16_RS08250 (FDP16_08600) - 1662005..1662691 (-) 687 WP_176799285.1 TIGR02206 family membrane protein -
  FDP16_RS08255 (FDP16_08605) murF 1662752..1664122 (-) 1371 WP_176799286.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FDP16_RS08260 (FDP16_08610) - 1664198..1665250 (-) 1053 WP_176799287.1 D-alanine--D-alanine ligase -
  FDP16_RS08265 (FDP16_08615) recR 1665469..1666065 (-) 597 WP_176799288.1 recombination mediator RecR Machinery gene
  FDP16_RS08270 (FDP16_08620) pbp2b 1666169..1668235 (-) 2067 WP_176799289.1 penicillin-binding protein PBP2B -
  FDP16_RS08275 (FDP16_08625) - 1668444..1669136 (-) 693 WP_002896114.1 phosphoglycerate mutase -
  FDP16_RS08280 (FDP16_08630) - 1669286..1670029 (-) 744 Protein_1619 hypothetical protein -
  FDP16_RS08285 (FDP16_08635) - 1670063..1670806 (-) 744 WP_176799290.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21610.62 Da        Isoelectric Point: 4.4218

>NTDB_id=323325 FDP16_RS08265 WP_176799288.1 1665469..1666065(-) (recR) [Streptococcus sanguinis strain CGMH058]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELSYCSVCGNLTDEDPCAICQDQSRDQS
TILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLIDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLIRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=323325 FDP16_RS08265 WP_176799288.1 1665469..1666065(-) (recR) [Streptococcus sanguinis strain CGMH058]
ATGCTTTACCCAACCCCTATTGCCAAGCTGATTGACAGTTTTTCTAAGCTGCCCGGCATTGGCATCAAAACAGCTACTCG
ACTGGCTTTTTACACTATTGGCATGAGTGATGACGATGTTAATGAATTTGCCAAGAATCTACTGGCTGCTAAGCGTGAGC
TGAGCTACTGCTCTGTCTGTGGCAACCTGACGGACGAAGACCCTTGTGCTATCTGTCAAGACCAGTCGCGCGATCAATCG
ACTATTTTGATTGTTGAGGACAGCCGGGATGTGTCAGCCATGGAAAATATCCAGGAATACCACGGACTTTATCATGTCCT
GCATGGCTTGATTTCACCTATGAACGGCGTTGGACCAGATGACATCAATCTCAAAAGCCTGATTACTCGTCTGATAGATA
GCGAGGTAACGGAGGTCATCGTCGCAACCAATGCGACAGCGGATGGCGAAGCGACTTCCATGTATATTTCACGTGTCTTG
AAACCCGCTGGGATTAAGGTGACTCGCCTAGCGCGTGGTTTGGCGGTTGGCTCTGACATTGAGTATGCGGATGAGGTTAC
GCTGATTCGCGCTATCGAAAATCGGACGGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment