Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FDP16_RS05260 Genome accession   NZ_CP040798
Coordinates   1024830..1026650 (+) Length   606 a.a.
NCBI ID   WP_176798851.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019830..1031650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS05245 (FDP16_05455) - 1020933..1021769 (-) 837 WP_125332397.1 sugar ABC transporter permease -
  FDP16_RS05250 (FDP16_05460) - 1021769..1023127 (-) 1359 WP_176798849.1 carbohydrate ABC transporter permease -
  FDP16_RS05255 (FDP16_05465) - 1023208..1024464 (-) 1257 WP_176798850.1 extracellular solute-binding protein -
  FDP16_RS05260 (FDP16_05470) uvrC 1024830..1026650 (+) 1821 WP_176798851.1 excinuclease ABC subunit UvrC Machinery gene
  FDP16_RS05265 (FDP16_05475) - 1026827..1027279 (+) 453 WP_256254428.1 hypothetical protein -
  FDP16_RS05270 (FDP16_05480) - 1027276..1028115 (+) 840 WP_176798852.1 metallophosphoesterase -
  FDP16_RS11835 - 1028129..1029031 (+) 903 WP_256254429.1 hypothetical protein -
  FDP16_RS11840 - 1029052..1029459 (+) 408 WP_256254430.1 hypothetical protein -
  FDP16_RS11845 - 1029564..1029776 (+) 213 WP_256254431.1 hypothetical protein -
  FDP16_RS05280 (FDP16_05490) - 1029891..1030496 (+) 606 WP_176798853.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69554.99 Da        Isoelectric Point: 8.5654

>NTDB_id=323301 FDP16_RS05260 WP_176798851.1 1024830..1026650(+) (uvrC) [Streptococcus sanguinis strain CGMH058]
MNKLIQSKLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEIEDFEFIVTESNIEALLLEIN
LIKENQPKYNIMLKDDKSYPFIKITNETYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRLFPFRKCTNPPEKVCF
YYHLGQCKAHTICQVDSQYFKELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAK
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHLKPNEILIPADIDEEAVRAM
VDTKVLKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKSIEKTQGAIENLGQLLNIPTPVRIESFDNSNIMGTSPVSAMVV
FVNGKPSKKDYRKYKIKTVVGPDDYASMREVIKRRYSRVIRDGLTPPDLIIIDGGQGQVNVAKEVIQEQFGLDIPIAGLQ
KNDKHQTHELLFGDPLQVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMRHFKSL
TKIKEASVDQIVEVGVPRAVAEAVQRKLNPEEVELAQVAEPIKELE

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=323301 FDP16_RS05260 WP_176798851.1 1024830..1026650(+) (uvrC) [Streptococcus sanguinis strain CGMH058]
ATGAATAAGCTAATCCAATCAAAGCTGGAACTGTTGCCGACCAGTCCCGGCTGTTACATTCACAAAGACAAAAACGATAC
CATTATCTATGTCGGAAAAGCCAAGAATCTTCGCAATCGGGTTCGTTCTTATTTTCGTGGTAGCCATGATACCAAGACGG
AGGCTCTGGTTTCTGAGATTGAGGATTTTGAGTTTATTGTCACCGAGTCCAACATTGAGGCTTTGCTTCTGGAGATCAAT
CTAATCAAGGAAAACCAGCCCAAGTACAATATCATGCTCAAGGACGATAAGTCCTATCCTTTTATTAAGATTACCAACGA
AACCTATCCGCGCCTGATTATCACGCGCCAGGTTAAAAAAGACGGTGGGCTTTATTTTGGCCCTTACCCCGATGTTGGTG
CGGCCAATGAAATCAAGCGTCTTTTAGATCGGCTCTTTCCTTTTCGCAAGTGTACCAATCCACCTGAAAAGGTCTGCTTT
TACTACCATCTGGGGCAGTGCAAGGCCCACACTATTTGCCAGGTAGACAGCCAGTATTTCAAGGAGCTAGCCCAGGAGGT
AGCAGCCTTTCTCAAGGGTCAGGATGACCAGATTATTGAGGATTTACGGGGGAAAATGGCTGGCGCAGCACAAGCTATGG
AGTTTGAAAAGGCAGCGGAGTACCGCGACTTGATTCAGTCCATTGGCACCCTGCGAACCAAGCAGCGGGTTATGGCTAAG
GATCTGCAGAATCGTGATGTTTTTGGCTACTATGTGGATAAGGGCTGGATGTGCGTACAGGTCTTCTTTGTCCGTCAGGG
CAAGCTAATCGAACGTGATGTCAACCTTTTTCCCTATTACAATGATCCGGATGAAGATTTTCTGACCTATATCGGCCAGT
TCTACCAGGAAAAGTCCCACCTCAAGCCCAATGAAATTTTGATTCCAGCAGATATTGACGAAGAAGCTGTCCGAGCCATG
GTCGATACCAAGGTGCTTAAGCCCCAGCGAGGTGAGAAGAAGCAGTTGGTCAATCTCGCTATCAAAAACGCCCGAGTCAG
TCTTCAGCAGAAATTTGACCTCTTGGAGAAATCTATTGAAAAGACTCAAGGGGCTATCGAGAATCTAGGGCAGCTCCTTA
ACATTCCGACACCTGTTCGTATTGAGTCTTTTGATAACTCCAACATCATGGGGACCAGTCCTGTATCAGCTATGGTGGTC
TTTGTCAATGGTAAACCAAGCAAGAAGGACTATCGCAAGTATAAGATTAAGACTGTGGTAGGACCTGATGACTACGCAAG
TATGCGAGAAGTCATCAAGCGCCGTTACAGTCGAGTGATTCGTGATGGACTGACTCCGCCTGATCTGATTATCATTGACG
GTGGACAGGGCCAAGTCAATGTCGCTAAAGAAGTTATTCAGGAGCAGTTTGGATTGGATATTCCCATCGCTGGACTGCAA
AAAAATGACAAGCACCAGACCCATGAATTGCTCTTTGGCGACCCTCTGCAGGTTGTAGAATTATCCCGGAATTCGCAGGA
ATTTTTCCTACTCCAGCGTATCCAAGATGAGGTCCACCGCTTCGCAATTACTTTCCACCGCCAGCTCCGGTCTAAAAATT
CCTTCTCATCGCAGCTAGATGGCATTGAAGGCCTGGGACCAAAACGCAAGCAGAATCTGATGAGGCATTTCAAATCTCTA
ACCAAGATTAAAGAAGCCAGTGTTGACCAAATTGTTGAAGTCGGCGTACCACGAGCAGTGGCAGAAGCGGTTCAAAGAAA
GTTGAACCCAGAAGAAGTGGAATTAGCTCAAGTTGCGGAGCCAATAAAAGAATTAGAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(197-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

89.833

99.01

0.889
  uvrC Streptococcus pneumoniae D39

89.833

99.01

0.889
  uvrC Streptococcus pneumoniae TIGR4

89.833

99.01

0.889