Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FGE23_RS18350 Genome accession   NZ_CP040672
Coordinates   3701141..3702913 (-) Length   590 a.a.
NCBI ID   WP_071391533.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3696141..3707913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS18325 sdhA 3696353..3698113 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  FGE23_RS18330 sdhC 3698147..3698755 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  FGE23_RS18335 - 3699052..3699498 (+) 447 WP_146277275.1 YslB family protein -
  FGE23_RS18340 - 3699545..3700774 (-) 1230 WP_146277277.1 aspartate kinase -
  FGE23_RS18350 uvrC 3701141..3702913 (-) 1773 WP_071391533.1 excinuclease ABC subunit UvrC Machinery gene
  FGE23_RS18355 trxA 3703057..3703371 (-) 315 WP_003152560.1 thioredoxin -
  FGE23_RS18360 - 3703524..3705014 (-) 1491 WP_146277279.1 alpha-N-arabinofuranosidase -
  FGE23_RS18365 - 3705223..3706200 (-) 978 WP_017418309.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  FGE23_RS18370 - 3706232..3707005 (-) 774 WP_094247679.1 electron transfer flavoprotein subunit beta/FixA family protein -
  FGE23_RS18375 - 3707019..3707798 (-) 780 WP_102421648.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68328.23 Da        Isoelectric Point: 9.6173

>NTDB_id=323142 FGE23_RS18350 WP_071391533.1 3701141..3702913(-) (uvrC) [Bacillus amyloliquefaciens strain X030]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGDALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=323142 FGE23_RS18350 WP_071391533.1 3701141..3702913(-) (uvrC) [Bacillus amyloliquefaciens strain X030]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCTTTTATTAAAATCACCCATGA
ACGCCATCCTCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGGGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTTGAAGCGAAAATGGCAGAAGCGGCCGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATTGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTTATACGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCAGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTTGGCGACGCACTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATAGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTCCGCGAAAACCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGGACATCGAACCTGTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCCGGTGTCCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(374-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592