Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FGE23_RS01000 Genome accession   NZ_CP040672
Coordinates   184203..184835 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain X030     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 179203..189835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS00980 - 180232..180417 (-) 186 WP_003151806.1 YvzF family protein -
  FGE23_RS00985 - 180534..181976 (+) 1443 WP_039253912.1 spore germination protein -
  FGE23_RS00990 - 181951..183051 (+) 1101 WP_070082343.1 spore germination protein -
  FGE23_RS00995 - 183048..184160 (+) 1113 WP_146275476.1 Ger(x)C family spore germination protein -
  FGE23_RS01000 vraR 184203..184835 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  FGE23_RS01005 liaS 184813..185895 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  FGE23_RS01010 liaF 185892..186623 (-) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  FGE23_RS01015 - 186650..187519 (-) 870 WP_094247510.1 DUF4097 domain-containing protein -
  FGE23_RS01020 liaH 187625..188302 (-) 678 WP_003151791.1 stress responsive protein LiaH -
  FGE23_RS01025 - 188316..188696 (-) 381 WP_003151789.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=323006 FGE23_RS01000 WP_003151798.1 184203..184835(-) (vraR) [Bacillus amyloliquefaciens strain X030]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=323006 FGE23_RS01000 WP_003151798.1 184203..184835(-) (vraR) [Bacillus amyloliquefaciens strain X030]
GTGATTCGAGTGTTACTGATTGATGATCATGAGATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGTGAACCGAAGCTTGAATCGAAAGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACGAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTCTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment