Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VS_RS11960 Genome accession   NC_011753
Coordinates   2729235..2729840 (+) Length   201 a.a.
NCBI ID   WP_012604737.1    Uniprot ID   A0A2N7I3Z7
Organism   Vibrio atlanticus     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2724235..2734840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS11940 (VS_2535) - 2724454..2725371 (-) 918 WP_009847588.1 ABC transporter ATP-binding protein -
  VS_RS11945 (VS_2536) - 2725694..2727325 (-) 1632 WP_029223085.1 SulP family inorganic anion transporter -
  VS_RS11950 (VS_2537) can 2727612..2728271 (+) 660 WP_009847590.1 carbonate dehydratase -
  VS_RS11955 (VS_2538) hpt 2728367..2728897 (-) 531 WP_009847591.1 hypoxanthine phosphoribosyltransferase -
  VS_RS11960 (VS_2539) opaR 2729235..2729840 (+) 606 WP_012604737.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VS_RS11965 (VS_2540) lpdA 2730181..2731611 (-) 1431 WP_012604738.1 dihydrolipoyl dehydrogenase -
  VS_RS11970 (VS_2541) aceF 2731854..2733728 (-) 1875 WP_012604739.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23231.44 Da        Isoelectric Point: 5.8715

>NTDB_id=32284 VS_RS11960 WP_012604737.1 2729235..2729840(+) (opaR) [Vibrio atlanticus]
MDSITKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSNWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=32284 VS_RS11960 WP_012604737.1 2729235..2729840(+) (opaR) [Vibrio atlanticus]
ATGGACTCAATAACGAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGCGGTGGACACGCTGATATTGCCGACATCGCTCAGGTGTCAGTAGCAACAGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTTGTTCGTCAATTCTCGAACTTCCTTTCA
GACAACATTGACCTAGATATTCACGCAAAAGAAAATCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCAATTGGTTAAATGTATGGTTCGAATGGAGTGCATCAACTCGCGATGAAGTGTGGCCTCTGTTTGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAACATGTTTAGCAAGGCGATTGAACGCGGCGAAGTCTGTGACGATCACGATCCTAAA
CACCTAGCAAATCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7I3Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment