Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SMI_RS03110 Genome accession   NC_013853
Coordinates   556651..557247 (+) Length   198 a.a.
NCBI ID   WP_000966756.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551651..562247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS03085 (smi_0609) - 551714..552610 (+) 897 WP_000150236.1 ROK family protein -
  SMI_RS03090 (smi_0610) - 552850..553137 (+) 288 WP_000020412.1 hypothetical protein -
  SMI_RS03095 (smi_0611) - 553127..553477 (+) 351 WP_000384973.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SMI_RS03100 (smi_0612) - 553539..554390 (-) 852 WP_000360347.1 MurR/RpiR family transcriptional regulator -
  SMI_RS03105 (smi_0613) pbp2b 554583..556640 (+) 2058 WP_012972469.1 penicillin-binding protein 2B -
  SMI_RS03110 (smi_0614) recR 556651..557247 (+) 597 WP_000966756.1 recombination mediator RecR Machinery gene
  SMI_RS03115 (smi_0615) - 557423..558466 (+) 1044 WP_000814687.1 D-alanine--D-alanine ligase -
  SMI_RS03120 (smi_0616) - 558551..559924 (+) 1374 WP_000778743.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SMI_RS03125 (smi_0617) - 560019..560723 (+) 705 WP_001055240.1 TIGR02206 family membrane protein -
  SMI_RS03130 (smi_0618) - 561078..562244 (-) 1167 WP_000163009.1 IS30-like element ISSmi1 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21762.89 Da        Isoelectric Point: 4.4927

>NTDB_id=32279 SMI_RS03110 WP_000966756.1 556651..557247(+) (recR) [Streptococcus mitis B6]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVATMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=32279 SMI_RS03110 WP_000966756.1 556651..557247(+) (recR) [Streptococcus mitis B6]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCAACCCG
TCTAGCCTTTTATACGATTGGGATGTCTGATGACGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACCTACTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTGGTGCTAGAGGATAGTCGGGATGTGGCGACCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCCCCTATGAATGGTATCAGTCCAGACGATATCAATCTCAAGAGCCTCATGACTCGTCTGATGGATA
GTGAGGTTTCAGAAGTAATCGTAGCAACCAATGCCACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATCAAGGTTACGCGCTTGGCACGAGGCCTTGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
CCTCTTACGGGCTATTGAAAATCGAACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

98.99

100

0.99
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment