Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | D9Y32_RS21000 | Genome accession | NZ_CP033218 |
| Coordinates | 4023742..4024077 (+) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain TCCC 11148 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4018742..4029077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9Y32_RS20980 (D9Y32_21005) | gcvT | 4019164..4020268 (-) | 1105 | Protein_4119 | glycine cleavage system aminomethyltransferase GcvT | - |
| D9Y32_RS20985 (D9Y32_21010) | - | 4020861..4022540 (+) | 1680 | WP_142782882.1 | DEAD/DEAH box helicase | - |
| D9Y32_RS20990 (D9Y32_21015) | - | 4022547..4023341 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| D9Y32_RS20995 (D9Y32_21020) | sinI | 4023532..4023708 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| D9Y32_RS21000 (D9Y32_21025) | sinR | 4023742..4024077 (+) | 336 | WP_006637528.1 | transcriptional regulator SinR | Regulator |
| D9Y32_RS21005 (D9Y32_21030) | tasA | 4024182..4024976 (-) | 795 | WP_142782737.1 | biofilm matrix protein TasA | - |
| D9Y32_RS21010 (D9Y32_21035) | sipW | 4025050..4025634 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| D9Y32_RS21015 (D9Y32_21040) | tapA | 4025631..4026359 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| D9Y32_RS21020 (D9Y32_21045) | - | 4026636..4026956 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| D9Y32_RS21025 (D9Y32_21050) | - | 4026980..4027162 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| D9Y32_RS21030 (D9Y32_21055) | comGG | 4027250..4027615 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| D9Y32_RS21035 (D9Y32_21060) | comGF | 4027628..4028116 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| D9Y32_RS21040 (D9Y32_21065) | comGE | 4028025..4028372 (-) | 348 | WP_009327907.1 | competence type IV pilus minor pilin ComGE | - |
| D9Y32_RS21045 (D9Y32_21070) | comGD | 4028356..4028793 (-) | 438 | WP_009327905.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=322755 D9Y32_RS21000 WP_006637528.1 4023742..4024077(+) (sinR) [Bacillus licheniformis strain TCCC 11148]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=322755 D9Y32_RS21000 WP_006637528.1 4023742..4024077(+) (sinR) [Bacillus licheniformis strain TCCC 11148]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |