Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VS_RS04555 Genome accession   NC_011753
Coordinates   1015270..1016658 (+) Length   462 a.a.
NCBI ID   WP_017099957.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010270..1021658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS04535 (VS_0977) rsxB 1010644..1011237 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  VS_RS04540 (VS_0978) rsxA 1011240..1011818 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  VS_RS04550 (VS_0980) uvrB 1012930..1014960 (+) 2031 WP_012603536.1 excinuclease ABC subunit UvrB -
  VS_RS04555 (VS_0982) luxO 1015270..1016658 (+) 1389 WP_017099957.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VS_RS04560 (VS_0983) luxU 1016683..1017027 (+) 345 WP_012603538.1 quorum-sensing phosphorelay protein LuxU -
  VS_RS04565 (VS_0984) - 1017110..1017997 (-) 888 WP_012603539.1 YvcK family protein -
  VS_RS04570 (VS_0985) moaA 1018333..1019322 (+) 990 WP_029223023.1 GTP 3',8-cyclase MoaA -
  VS_RS04575 (VS_0986) moaB 1019679..1020191 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  VS_RS04580 (VS_0987) moaC 1020204..1020683 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  VS_RS04585 (VS_0988) moaD 1020680..1020925 (+) 246 WP_009848640.1 molybdopterin synthase sulfur carrier subunit -
  VS_RS04590 (VS_0989) moaE 1020928..1021401 (+) 474 WP_012603541.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51726.23 Da        Isoelectric Point: 6.0330

>NTDB_id=32272 VS_RS04555 WP_017099957.1 1015270..1016658(+) (luxO) [Vibrio atlanticus]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAEEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNVPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=32272 VS_RS04555 WP_017099957.1 1015270..1016658(+) (luxO) [Vibrio atlanticus]
ATGCAATCAAAAACGTTAGATAACAAATCGAAGTATTTGTTAATGGTAGAAGATACCGCGTCGGTAGCAGCGTTATATCG
ATCGTATCTTACACCGCTCGAAATTGATATTAACATTGTTGGTACTGGCCGCGATGCAATCGAGAGTTTGAACCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGCCTGCCCGATATGACGGGTATGGATGTACTGTTTGCTGTAAAACAAAAATAT
CCGGAAGTTCCCGTTATCTTCATGACTGCTCACGGCTCTATTGATACCGCAGTAGAAGCCATGCGACATGGTTCCCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCCACTAAACTTAAAA
ATAGCTCGGAAAATCCAGGAAATCAGAACTATCAAGGCTTTATTGGCAGTAGTCAAACCATGCAGCAGGTTTACCGAACG
ATCGATTCTGCCGCATCGAGCAAAGCCAGTATTTTCATCACAGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCTGAAGC
CATTCACGCTGCGAGTAAGCGTGGCGATAAGCCATTTATCGCAATTAACTGTGCAGCGATTCCTAAAGATTTGATTGAGA
GTGAATTGTTTGGTCACGTTAAAGGGGCCTTTACTGGAGCAGCAACGGATCGACAAGGCGCAGCTGAACTTGCAGATGGT
GGAACCCTGTTCCTCGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACTAAGCTACTCCGCTTCATTCAAACTGGTAC
CTTTCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTCGTATGTGCAACGAACCGCGACCCTTGGAAGG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTGATCCCACTGCATTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTCATCGAAATTGCATATTCATTGCTGGGTTATATGTCTGTCGAAGAAGGCAAGGCGTTCGTACGTTT
TGCTGAAGAAGTACTCGATCGCTTTAATCAATATGAGTGGCCGGGGAACGTTCGTCAGTTACAAAATGTGTTGCGAAATG
TAGTGGTACTGAATAATGGTAAAGAGATTACTCTCAATATGCTTCCACCGCCATTGAACCAACCAATTGAAAACAGTCTC
CGTTTAAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATCAAAGCGTGTGACGGTAACGTTCCTCGTGCGGCAGGTTTCTTGGATGTCAGTCCATCGACGATATACCGAA
AATTGCAAACATGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment