Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SMI_RS01880 Genome accession   NC_013853
Coordinates   356838..357569 (+) Length   243 a.a.
NCBI ID   WP_000889954.1    Uniprot ID   A0A3B0BHE7
Organism   Streptococcus mitis B6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 351838..362569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS01855 (smi_0356) - 352424..352919 (+) 496 Protein_340 DJ-1/PfpI family protein -
  SMI_RS01860 (smi_0357) dnaJ 353119..354258 (+) 1140 WP_012972447.1 molecular chaperone DnaJ -
  SMI_RS01865 (smi_0358) - 354390..356069 (+) 1680 WP_000276231.1 IS1182-like element ISSmi2 family transposase -
  SMI_RS01870 (smi_0359) - 356063..356350 (-) 288 WP_000777756.1 hypothetical protein -
  SMI_RS01875 (smi_0360) - 356360..356770 (-) 411 WP_001278316.1 HIT family protein -
  SMI_RS01880 (smi_0361) pptA 356838..357569 (+) 732 WP_000889954.1 ABC transporter ATP-binding protein Regulator
  SMI_RS01885 (smi_0362) pptB 357566..358615 (+) 1050 WP_000653796.1 ABC transporter permease Regulator
  SMI_RS01890 (smi_0363) - 358677..359006 (-) 330 WP_000132581.1 hypothetical protein -
  SMI_RS01895 (smi_0364) - 359389..359727 (+) 339 WP_000682130.1 LytTR family DNA-binding domain-containing protein -
  SMI_RS01900 (smi_0365) comE/blpR 359732..360469 (+) 738 WP_001219152.1 response regulator transcription factor Regulator
  SMI_RS01905 (smi_0366) - 360483..361832 (+) 1350 WP_001017633.1 sensor histidine kinase -
  SMI_RS01910 (smi_0367) - 361901..362257 (+) 357 WP_001036313.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27098.58 Da        Isoelectric Point: 4.6989

>NTDB_id=32271 SMI_RS01880 WP_000889954.1 356838..357569(+) (pptA) [Streptococcus mitis B6]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=32271 SMI_RS01880 WP_000889954.1 356838..357569(+) (pptA) [Streptococcus mitis B6]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTCCATGTCCCTGTCTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCGACGACTATCAATGAAATTATCGGTCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGCTATCGCAAGCAAATTGGTTACATTCCT
GAGACACCTAGCTTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGATCGAGTAGAACCTTTGTTAAAAATGTTCCGTCTGGACCAGAAATTGGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAAGTCATGATTATCTGTGCTTTTGTGGTGGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTAGCTATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCTTTTGTTATTCTTCACAAAGGGGAAGTGCGTGCCAAAG
GCAATCTCCTACAACTGCGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B0BHE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment