Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   D9Y32_RS04285 Genome accession   NZ_CP033218
Coordinates   861061..861459 (+) Length   132 a.a.
NCBI ID   WP_142782153.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 856061..866459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS04270 (D9Y32_04270) - 858113..858853 (+) 741 WP_003178817.1 ribonuclease YeeF family protein -
  D9Y32_RS04275 (D9Y32_04275) - 858969..860229 (+) 1261 Protein_821 methyl-accepting chemotaxis protein -
  D9Y32_RS04280 (D9Y32_04280) nucA/comI 860597..861043 (+) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D9Y32_RS04285 (D9Y32_04285) nin/comJ 861061..861459 (+) 399 WP_142782153.1 competence protein ComJ Regulator
  D9Y32_RS04290 (D9Y32_04290) - 861498..862934 (-) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  D9Y32_RS04295 (D9Y32_04295) - 863004..863730 (-) 727 Protein_825 AAA family ATPase -
  D9Y32_RS04300 (D9Y32_04300) - 863827..864378 (-) 552 WP_061575968.1 NAD(P)H-dependent oxidoreductase -
  D9Y32_RS04305 (D9Y32_04305) - 864562..865437 (+) 876 WP_142782154.1 transporter substrate-binding domain-containing protein -
  D9Y32_RS04310 (D9Y32_04310) - 865449..866132 (+) 684 WP_003178799.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15078.14 Da        Isoelectric Point: 5.1700

>NTDB_id=322701 D9Y32_RS04285 WP_142782153.1 861061..861459(+) (nin/comJ) [Bacillus licheniformis strain TCCC 11148]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNVQKQVLSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQD

Nucleotide


Download         Length: 399 bp        

>NTDB_id=322701 D9Y32_RS04285 WP_142782153.1 861061..861459(+) (nin/comJ) [Bacillus licheniformis strain TCCC 11148]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGTCCAAAAACAGGTGCTCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTCGAAATTGCAAGCGTTCTATCCAAGAAATTGACATGCGATATCCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGATTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485

Multiple sequence alignment